LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi15g00006	ATGACACAGCAAACACTACCTCATCCTTCTTCCTTCACCTGTGAATGCACTTATGATGTCTTCCTCAACTTTAGAGGTGTTGATACACGCCACAATTTCACTGGTAATCTCTACAATTCTCTTCATGAAAGGGGTATTCACACCTTCTTTGATGATGAAAGACTTAACAAAGGTGAAGAAATCACACCATCTCTTTTCCAAGGCATACAAGATTCTAGGATTTTCATTGCTGTTCTCTCTAAGAACTATGCATCCTCTACATATTGTTTGGATGAACTAGTCATGATCCTTGAGTGCTCAAAGGCACAAGGACGGTTGTTTTGGCCTGTTTTTTATGATGTGGACCCATCACAAGTTCGGCACCAGAGTGGCACTTATGCAGAAGCTTTGGCTATACTTGAGGAGAGGTTCAAGGATGACAAGGAGAAGGTGAAAAAATGGAGGGAGGCTTTATGTCAAGCTGCTAATATGTCTGGATCTCATTTCCAACACGGTTCTCAATCAGAATATCAGTTTATTAAAAAGATTGTTGAAGAAGTCTCTAAAAAGATCGATCGCACTCCTTTATATATTGCTGCTAAAACGGTTGCATTAGAGTCTCGAGTGCTAGAAGTGACATCTCTCCTAGGACTCGGATCTGATAAGGGAGTGAACATGGTAGGCATTCATGGAATTGGTGGGATAGGGAAATCAACACTTGCTCGTGCTGTATATAACTTGATTGCTGATCAATTTGAAGGTTGTTGTTTCCTTGCTAACATACGAGAAAGGGCAATTAATAATGATGGTCTTGTACAACTCCAAAAAGCACTACTCTCTGAACTGCTTGGGGTGAAAGATATTGAAGTGGGAGATGTTTACAGCGGAATTCCAATAATAAAAAGGAGGCTTCGGCAAAAGAAGGTCCTTTTGATTCTTGATGATGTTGACAAACTGAAGCAGTTAGAGGTAATTGCAGGAGGATGTGATTGGTTTGGCTCTGGCAGCAGGATCATAATCACAACAAGAGACAAGCATTTGCTAGCCACTCATGGGATTGTAAAATCATATGAGGTTAAACAGTTGAGTGACGATAAAGCTCTTGAATTGTTTAGTTGGCATGCCTTTAAGAAAAACAAAATTGATCCAATTTATGTGGATATTTCAAAAAGTGCAGTTTCTTATGCTCGTGGCCTTCCATTGGCTTTGGAGATGATAGGTTCTCACTTGTTTGGCAAAAGTTTAGAGGTATGGAAATCTGCATTGGAAAAATATAAAAGAACTGCTCATAAAGATATCCATAAAACACTTAAAATTAGCTATGATGATTTGGAAGACGATGAGAAGGGAATTTTTCTTGACATTGCTTGTTTCTTCAATTCTTATGAAATAAGTTATGTCAAAGAAATACTATACTTACATGGTTTTCATGCGGAAAATGGTATTCAAGTGTTGACTGATAAATCTCTCATAAAGATTGACCTTAATGGTTTCGTGAGGATGCATGACTTAATTCAGGATATGGGCAGAGAAATCATTAGGCAGGAATCAACATTGGAGCCTGGCAGATGCAGTAGATTATGGTTTAACGAAGACATTGTTCATGTTTTGGAAAATGATACGGGAACTGATACAATTGAAGCTATAATCATCAACCTGTGGAATGACCAAGAAGTGCAGTGGAGTGGAAAAGCCTTCGAGAAGATGAAAAACCTGAGAATTCTTATAATCAGAGATGCACGCTTTTCTAGAGGACCTCAGAATCTACCAAATAGCTTGAGAGTGCTTGATTGGAGTGGGTATCCATCACTGTCTTTACCATCTGATTTTAATCCAAAGAATCTTGTGATACTTAGTCTGCCTGAAAGTTGCCTTAGATCATTTAAACCACTCAAGGTGTTTCAGTCGTTGAACTTTATGGATTTTGAAGGTTGCAAGTTCTTAACTGAACTACCTCGCTTAAGTGGTGTACCAAATTTGGGGGCACTTTGTCTTGATAATTGCACCAATTTAATTAGAATTGATGGTTCGGTTGGATTTCTTGAAAGGCTCGTGTCGTTGAGTGCTCGAGGATGCACGCGGCTAGAAATATTGGTTCCCTCTATCAACTTGACATCTCTAGAAACTCTGGATCTGAGTGGTTGCTCGTGTCTTGACAGCTTCCCAGAAGTTTTTGGAGTAATGGAGAATATAAGAGATGTTAATTTGGACAAGACTGCTATAGATGAATTGCCATTTTCAATTGGAAATCTTGTGGGGCTCCAACGATTGTTCTTGAGGGAATGCCAAGGGTTGTTCTATCTACCAAGTAGCATCCATAGATTGTCTAAACTTGAGGTAATAACGGCTTATGGTCGTAGGGGATTTCGCTTATCTGAAGATAAAGAAAAAGTGAGCTCAAAAGTGTTTCCAAACGCCATGCTTGTTAATTATCAAGGCAATAGATGTTGGTTCTGCCTTGATGTGTATTATCTTAATATAAGTCCCAATAATGTCATAGAAGTAGGTAGACCTTCGTTGATTCCCTCTGTGCAAATTGATGGGCTTTTGGTTCCTCATTCCCTATGGGCTAAAACGGTTAAAGGAGAGTGGGCAAGTTATTATGGCAGATTTACAAGTAATGGAACGCGGATGTGTTTTTGGTTCCGAAACAAATTCCCCAAGATAGGTGTGTGTTGTGCTAGACAACCTGGCACGTATGAAGACAATATGGTGTTGGATTTCAAGCTCAGTGTAGTCATCAATGGCACTAAGCAATTCAGTTCTTCATGTAACTACGTAGTTTCTAGACGAGGAATGAGGGATATAATGCTTAGCTGTGATCTACAAAGCAAAGCGGAGAGTGTATTTTCAGAGCATGAATGGAATAAGGAAACAACAAGGAGGATATCCAATTTGCATAAAGGAATGTCAAGAGATGCAGAGAATAAAGGAAAAGCCGTTCGGTTCGTGCTTCTTCTCCAATGTCGCATCTGCATCATCTTGTAA	2967	0.3937	MTQQTLPHPSSFTCECTYDVFLNFRGVDTRHNFTGNLYNSLHERGIHTFFDDERLNKGEEITPSLFQGIQDSRIFIAVLSKNYASSTYCLDELVMILECSKAQGRLFWPVFYDVDPSQVRHQSGTYAEALAILEERFKDDKEKVKKWREALCQAANMSGSHFQHGSQSEYQFIKKIVEEVSKKIDRTPLYIAAKTVALESRVLEVTSLLGLGSDKGVNMVGIHGIGGIGKSTLARAVYNLIADQFEGCCFLANIRERAINNDGLVQLQKALLSELLGVKDIEVGDVYSGIPIIKRRLRQKKVLLILDDVDKLKQLEVIAGGCDWFGSGSRIIITTRDKHLLATHGIVKSYEVKQLSDDKALELFSWHAFKKNKIDPIYVDISKSAVSYARGLPLALEMIGSHLFGKSLEVWKSALEKYKRTAHKDIHKTLKISYDDLEDDEKGIFLDIACFFNSYEISYVKEILYLHGFHAENGIQVLTDKSLIKIDLNGFVRMHDLIQDMGREIIRQESTLEPGRCSRLWFNEDIVHVLENDTGTDTIEAIIINLWNDQEVQWSGKAFEKMKNLRILIIRDARFSRGPQNLPNSLRVLDWSGYPSLSLPSDFNPKNLVILSLPESCLRSFKPLKVFQSLNFMDFEGCKFLTELPRLSGVPNLGALCLDNCTNLIRIDGSVGFLERLVSLSARGCTRLEILVPSINLTSLETLDLSGCSCLDSFPEVFGVMENIRDVNLDKTAIDELPFSIGNLVGLQRLFLRECQGLFYLPSSIHRLSKLEVITAYGRRGFRLSEDKEKVSSKVFPNAMLVNYQGNRCWFCLDVYYLNISPNNVIEVGRPSLIPSVQIDGLLVPHSLWAKTVKGEWASYYGRFTSNGTRMCFWFRNKFPKIGVCCARQPGTYEDNMVLDFKLSVVINGTKQFSSSCNYVVSRRGMRDIMLSCDLQSKAESVFSEHEWNKETTRRISNLHKGMSRDAENKGKAVRFVLLLQCRICIIL	988

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi15g00006	988	Gene3D	-	191	348	IPR027417	-
	Gabi15g00006	988	Gene3D	-	13	190	IPR035897	-
	Gabi15g00006	988	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	448	IPR027417	-
	Gabi15g00006	988	SMART	till_3	17	157	IPR000157	GO:0007165
	Gabi15g00006	988	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	775	IPR044974	GO:0006952
	Gabi15g00006	988	Pfam	TIR domain	18	187	IPR000157	GO:0007165
	Gabi15g00006	988	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	159	IPR035897	-
	Gabi15g00006	988	Pfam	NB-ARC domain	212	436	IPR002182	GO:0043531
	Gabi15g00006	988	Gene3D	Ribonuclease Inhibitor	533	808	IPR032675	-
	Gabi15g00006	988	PRINTS	Disease resistance protein signature	389	403	-	-
	Gabi15g00006	988	PRINTS	Disease resistance protein signature	695	711	-	-
	Gabi15g00006	988	PRINTS	Disease resistance protein signature	219	234	-	-
	Gabi15g00006	988	PRINTS	Disease resistance protein signature	296	310	-	-
	Gabi15g00006	988	SUPERFAMILY	"Winged helix" DNA-binding domain	425	531	IPR036390	-
	Gabi15g00006	988	Gene3D	-	354	438	IPR042197	-
	Gabi15g00006	988	SUPERFAMILY	L domain-like	542	824	-	-
	Gabi15g00006	988	Coils	Coil	130	150	-	-
	Gabi15g00006	988	ProSiteProfiles	TIR domain profile.	16	184	IPR000157	GO:0007165
	Gabi15g00006	988	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi15g00006	Gabi-Chr15	99393	107506	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi15g00006	7	778	WRKY Transcription Factor Family	AT4G12020	33.838	6.57e-104	355

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi15g00006	-		-	mtr:11440666	1259.2