LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi15g00004	ATGACGAGTGCTATCCTCAGAAGATCTTCTTCCATATTCTCGCGGCGCTTTTTCGCCGCCGTCACCTCCGTCGAGCCTCTTCCGTACCTCCACAACCAACGCCTTACTTCCTCCGCTGCCGTCCCCTTCAGGAGCGGCGGAGCCAGGTCCTTTCACGCAAAATCTGGACCGTTGAATTTCCACTCGTCTTTGGTTTCACATGCTGCACAGTATGCAGTGGATCGCGATTACTCCAACGACGATGAAGGTTCCAGTGAGAAGTGTGACGAAGGCCTCGAGATAGCGAAGCTTGGGATCTCTCAGGAGATCGTGGATGCTCTGGCCAAGAAAGGGATATCGAAGCTCTTCCCCATTCAGAGAGCTGTGCTGGAACCTGCGATGCAAGGGCGTGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGATAAGATCATTCAGTTCAATGCTAAGCATGGGCGAGGAAGGGATCCTTCGGCTTTGGTTTTGGCACCAACCAGAGAACTTGCGCGGCAGGTTGAAAAGGAATTCAATGAGGCTGCACCAAACTTGGACTCAATTTGTCTTTATGGGGGTATGCCCATCAGTCAACAAATGAGGCAGCTAGATTATGGCGTAGATATTGCAGTTGGCACACCTGGTCGAATTATTGATCTTCTCAACAGGGGTTCACTGAATTTGAAGGATGTTCAGTTTGTTGTTCTCGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGATGTGGAGAAGATCTTGCAGAGGTTGCCTTCAAAACGTCAGACACTTATGTTCTCAGCTACGATGCCATCTTGGATAAAGGATATTACCCGCAATTACCTTAAGAACCCCCTGACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATATCGCTGTGCTGTATTGCGTCTGATATGTATGCTAAAGCAGGAATTCTTGCACCTCTAATAACCGAACATGCAAAAGGAGGAAAATGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCATATATGATGGCAAAAAGCCTTAAATGTGAGGCCTTGCATGGAGATATTTCACAAGCTCAGAGGGAAAGAACTCTTACTGGCTTCAGAAACAACAATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCAAATGTTGATCTTGTAATACATTATGAACTTCCCAATTCGTCCGAGATATTTGTTCATCGATCTGGACGAACGGGCCGTGCTGGGAAGAAAGGGACTGCTATTCTTGTTTACACTGAAGATCAAGGCAGGGCTTTAAAGACTATTGAGCGTGATGTTGGATGCAGATTTAAGGAGCTACCAAAGATTGATGTTAAAATTGGATCAGAAGACATGTTTGGCGGCATGAGTGGTGGTCGATTTGGCCCTTCAGGGGGTATGAGGAATCGTCAATCTAGTGGTACAGGTTTTGGTCGTGGTTCTGGATCTGGCCGTTCTGGGAGTTACAGTAACTCTGGATTTGGCCGATCCGGCTATGGAAATTCTGGAGGATCAAATTCTAGTCGTTCTGGAGGTTCAAGTCAGTCAGGAGGGGGTTTTGGGGGATTTTCTGGTAATTCTTCCGGTGAAATGGGTAGGTATGGTGGACCAAGCTCTGGTCGTTCTGGTTCCTTTGGTGGCTTTGGTTCACGTCAACCAGGAACTACATCTGGTGGAGATTCTCGCTCAGGTGGTTTAGGGGGATTTGGTAGTTCAGATCGTTCTGGTGGTTTTGGAGATTTTGGCTCTGGTCAATTTGGTGACAGAAAATCAAGCCAAAGCAGCAGCTTTGGTGATTTTCGTGGTAGTGGTTTTGGGGATAAACCCAAATAA	1899	0.4629	MTSAILRRSSSIFSRRFFAAVTSVEPLPYLHNQRLTSSAAVPFRSGGARSFHAKSGPLNFHSSLVSHAAQYAVDRDYSNDDEGSSEKCDEGLEIAKLGISQEIVDALAKKGISKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGRDPSALVLAPTRELARQVEKEFNEAAPNLDSICLYGGMPISQQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVVLDEADQMLQVGFQEDVEKILQRLPSKRQTLMFSATMPSWIKDITRNYLKNPLTIDLVGDSDQKLADGISLCCIASDMYAKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYMMAKSLKCEALHGDISQAQRERTLTGFRNNNFNVLVATDVASRGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQGRALKTIERDVGCRFKELPKIDVKIGSEDMFGGMSGGRFGPSGGMRNRQSSGTGFGRGSGSGRSGSYSNSGFGRSGYGNSGGSNSSRSGGSSQSGGGFGGFSGNSSGEMGRYGGPSSGRSGSFGGFGSRQPGTTSGGDSRSGGLGGFGSSDRSGGFGDFGSGQFGDRKSSQSSSFGDFRGSGFGDKPK	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi15g00004	632	CDD	SF2_C_DEAD	323	440	-	-
	Gabi15g00004	632	MobiDBLite	consensus disorder prediction	608	622	-	-
	Gabi15g00004	632	Pfam	Helicase conserved C-terminal domain	326	431	IPR001650	-
	Gabi15g00004	632	CDD	DEADc	103	298	-	-
	Gabi15g00004	632	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	123	297	IPR014001	-
	Gabi15g00004	632	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	166	451	IPR027417	-
	Gabi15g00004	632	SMART	ultradead3	111	308	IPR014001	-
	Gabi15g00004	632	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	326	470	IPR001650	-
	Gabi15g00004	632	FunFam	ATP-dependent RNA helicase RhlE	82	300	-	-
	Gabi15g00004	632	MobiDBLite	consensus disorder prediction	488	545	-	-
	Gabi15g00004	632	MobiDBLite	consensus disorder prediction	476	632	-	-
	Gabi15g00004	632	Gene3D	-	313	474	IPR027417	-
	Gabi15g00004	632	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	92	462	-	-
	Gabi15g00004	632	SMART	helicmild6	351	431	IPR001650	-
	Gabi15g00004	632	Pfam	DEAD/DEAH box helicase	116	285	IPR011545	GO:0003676\|GO:0005524
	Gabi15g00004	632	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	92	120	IPR014014	GO:0003724
	Gabi15g00004	632	MobiDBLite	consensus disorder prediction	565	584	-	-
	Gabi15g00004	632	Gene3D	-	93	301	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi15g00004	Gabi-Chr15	84268	92877	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi15g00004	97	463	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.884	9.00e-65	217

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi15g00004	-		-	gmx:100802553	756.518