Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi15g00001 ATGGCCACTTCCCCTTCTTTCAGTTTTGTACTCTTTTGCATCCTCTTCCACTTTGTGTGCCTCACTAGTCTTGCTTCTGTTTCTTCACTTCCTTTTTCTTTGAGAAAGCAAGCTTCTATCTTGGTTTCTTTGAAACAAGATTTTGAAGCTGCTAACTCTTCTTTGAGCACCTGGGACATGTCTAGCTACTTGTCCCTTTGCACTTGGTATGGCATTCAATGTGACCATAATAACAGGTCTGTGGTGTCACTTGATATATCCAATTTGAATGCTTCTGGGTCACTTTCACCTTCCATCACAGGACTCTTCACCCTTGTCAATGTTTCACTCCAAGGAAATGGGTTTTCTGGAGATTTCCCAGCTGATATTCACAAGCTTGCACAGTTGAGATTCCTCAACATATCCAACAATATGTTCAGTGGGAACTTGAGTTGGGAATTCTCACAATTGAAAGAGCTTGAAGTGCTAGATGCTTATGACAACAATTTCAATGGCTCACTTCCTGAGGGTGTCACTAAGCTCCTTAAGCTCAAGCACTTGAATTTTGGTGGGAATTACTTCTCAGGGAAAATCCCTCCAAGCTATGGAAACATGGGGCAGCTCAACTTTCTGTCTCTTGCAGGAAATGATTTGAGTGGTTTCATACCCAGTGAGCTTGGAAATCTCACTAATCTGACCTATCTTTACTTGGGATACTTCAATCAATTTGATGGTGGAATTCCTCTTCATTTTGGTAACCTGAACAATTTGGTTCATCTAGACCTTGCAAAATGTGGCTTGGAAGGTTCAATTCCAGCTGAGTTGGGCAACCTCTACAAGTTAGACACACTCTTCTTGCAAACTAATCAGCTTAGTGGTTCAATCCCACCCCAGCTAGGAAACTTGAGTAGCTTGAAATTTCTTGATCTATCAATCAATGAACTCACAGGAGATATCCCAAATGAGTTCTCAGGCCTTCATGAACTTATCCTCTTGAACTTATTCATCAACAGGTTTCATGGAGAAATTCCTCAGTTCATTGCTGAGCTACCAAAATTGGAGGTGCTGAAGCTGTGGCAGAACAACTTCACTGGTGAAATTCCTTCAAAGCTTGGCCAGAATGGAAGATTGACTGAGCTTGACTTGTCAACAAATAAGCTCACTGGTTTAGTGCCAAAATCTCTATGCCTTGGAAAGATGCTGAAGATTTTGATCTTGCTAAAAAATTTTCTGTTTGGATCTTTGCCTGATGGTCTTGGTCAATGTTACACACTCCAAAGAGTTCGTTTGGGTCAGAACTATTTGACTGGGCCACTTCCACATGGTTTTCTGTATTTGCCTGAGCTATCACTTGTGGAACTACAGAACAATTATCTTAGTGGTGAGGTTCCACAAAAAACAAATAGTACATCCTCCAAACTTGAACAGTTGAATCTATCAAACAATAACTTTTCAGGGTCTCTTCCAACTTCAATTGCAAATTTTCCCAACTTGCAATATCTGCTGCTTAGTGGAAATAGATTGTCAGGAGAAATCCCACCAGATATAGGGAGATTGAAAAGTATTGTCAAGTTTGATATAAGTATTAACAACTTTTCAGGTAGTATTCCTCCTGAGATAGGTAACTGTGTCTTACTCACCTATTTAGATTTGAGCCAAAACCAACTATCAGGCCCTATCCCAGTTCAAGTTGTTAAAGTTCATATATTGAACTATCTTAATGTCTCATGGAACCACCTAAACCAAAGCCTTCCCAAGGAACTTGGGGCCATGAAGGGCTTAACTTCAGCAGATTTTTCTCACAATAACTTCTCTGGTTCAATACCTGAAGAGGGACAATTCTCAGTCTTTAATTCTACATCCTTTGTGGGTAACCCTCAGCTCTGTGGATATGAGTTCAAACCATGCAACCTTTCTTCAACTGGGGTAATGGAGTCTCAAGAAAAAAGTGCAAAACCTGGAGTCCCTGGACAGTTTAAGTTCCTTTTTGCAATGACATTGTTGGGATGCTCATTGTTGTTTGCAACCTTAGCCATCATCAAGAGTAGAAAGGCAAGGAGGCACTCCAATTCATGGAAGCTCACAACATTTCAGAAGCTGGAATATGGAAGTGAAGACATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGAGGTGGATCTGGGGTTGTATACAGAGGAACCATGCCAAATGGAGAGGAAGTGGCTGTGAAGAAATTGTTGGGAATCAACAATGGCTCTTCTCATGATAATGGCTTCTCTGCAGAAATAAAGACATTGGGTAGAATCAGGCACAGGTACATTGTAAGGTTGCTAGCATTTTGTTCAAATAGAGAAACCAATTTACTTGTTTATGATTACATGCCAAATGGAAGCTTAGGTGAAGTCTTGCATGGGAAAAGGGGTGAGTTTCTCAAGTGGGATACTAGGCTGAAAATAGCCACAGAAGCTGCAAAAGGACTTTGTTATTTGCACCATGATTGTTCCCCTCTTATAATCCATAGAGATGTCAAGTCAAACAACATATTATTGAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCATGCAAGATACCGGGACATCAGAGTGCATGTCTTCCATTGCTGGTTCTTATGGCTATATAGCTCCAGAATATGCATACACATTGAAAGTTGATGAGAAAAGTGATGTTTATAGTTTTGGAGTGGTGTTGCTAGAACTCATAACAGGGCGAAGGCCAGTGGGGGATTTTGATGAAGAAGGATTAGACATTGTTCAATGGACCAAGATGCAAACAAATTGGAATAAAGAGATGGTGATGAAGATCCTTGATGAGAGGCTACATCACATTCCTTTATATGAAGCAAAACAAGTGTTTTTTGTGGCTATGTTATGTGTTCATGAACATAGCGTGGAACGACCAACCATGAGAGAAGTGGTTGAAATGCTTGCGCAAGCAAAGTAA 2943 0.405 MATSPSFSFVLFCILFHFVCLTSLASVSSLPFSLRKQASILVSLKQDFEAANSSLSTWDMSSYLSLCTWYGIQCDHNNRSVVSLDISNLNASGSLSPSITGLFTLVNVSLQGNGFSGDFPADIHKLAQLRFLNISNNMFSGNLSWEFSQLKELEVLDAYDNNFNGSLPEGVTKLLKLKHLNFGGNYFSGKIPPSYGNMGQLNFLSLAGNDLSGFIPSELGNLTNLTYLYLGYFNQFDGGIPLHFGNLNNLVHLDLAKCGLEGSIPAELGNLYKLDTLFLQTNQLSGSIPPQLGNLSSLKFLDLSINELTGDIPNEFSGLHELILLNLFINRFHGEIPQFIAELPKLEVLKLWQNNFTGEIPSKLGQNGRLTELDLSTNKLTGLVPKSLCLGKMLKILILLKNFLFGSLPDGLGQCYTLQRVRLGQNYLTGPLPHGFLYLPELSLVELQNNYLSGEVPQKTNSTSSKLEQLNLSNNNFSGSLPTSIANFPNLQYLLLSGNRLSGEIPPDIGRLKSIVKFDISINNFSGSIPPEIGNCVLLTYLDLSQNQLSGPIPVQVVKVHILNYLNVSWNHLNQSLPKELGAMKGLTSADFSHNNFSGSIPEEGQFSVFNSTSFVGNPQLCGYEFKPCNLSSTGVMESQEKSAKPGVPGQFKFLFAMTLLGCSLLFATLAIIKSRKARRHSNSWKLTTFQKLEYGSEDIIGCIKESNVIGRGGSGVVYRGTMPNGEEVAVKKLLGINNGSSHDNGFSAEIKTLGRIRHRYIVRLLAFCSNRETNLLVYDYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFMQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGDFDEEGLDIVQWTKMQTNWNKEMVMKILDERLHHIPLYEAKQVFFVAMLCVHEHSVERPTMREVVEMLAQAK 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi15g00001 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 36 146 - -
Gabi15g00001 980 SUPERFAMILY RNI-like 83 429 - -
Gabi15g00001 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 782 980 - -
Gabi15g00001 980 Gene3D Ribonuclease Inhibitor 291 367 IPR032675 -
Gabi15g00001 980 Pfam Protein tyrosine and serine/threonine kinase 706 976 IPR001245 GO:0004672|GO:0006468
Gabi15g00001 980 SMART LRR_typ_2 343 367 IPR003591 -
Gabi15g00001 980 SMART LRR_typ_2 198 222 IPR003591 -
Gabi15g00001 980 SMART LRR_typ_2 560 584 IPR003591 -
Gabi15g00001 980 SMART LRR_typ_2 488 512 IPR003591 -
Gabi15g00001 980 SMART LRR_typ_2 150 174 IPR003591 -
Gabi15g00001 980 SMART LRR_typ_2 271 294 IPR003591 -
Gabi15g00001 980 SMART LRR_typ_2 295 318 IPR003591 -
Gabi15g00001 980 SMART LRR_typ_2 368 390 IPR003591 -
Gabi15g00001 980 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Gabi15g00001 980 Gene3D Phosphorylase Kinase; domain 1 673 781 - -
Gabi15g00001 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 382 977 - -
Gabi15g00001 980 ProSiteProfiles Protein kinase domain profile. 704 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi15g00001 980 SUPERFAMILY L domain-like 369 628 - -
Gabi15g00001 980 ProSitePatterns Protein kinases ATP-binding region signature. 710 733 IPR017441 GO:0005524
Gabi15g00001 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 235 340 - -
Gabi15g00001 980 SUPERFAMILY Protein kinase-like (PK-like) 698 976 IPR011009 -
Gabi15g00001 980 Gene3D Ribonuclease Inhibitor 34 190 IPR032675 -
Gabi15g00001 980 SMART serkin_6 704 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi15g00001 980 Gene3D Transferase(Phosphotransferase) domain 1 782 980 - -
Gabi15g00001 980 Pfam Leucine Rich Repeat 176 194 IPR001611 GO:0005515
Gabi15g00001 980 Gene3D Ribonuclease Inhibitor 191 290 IPR032675 -
Gabi15g00001 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 673 781 - -
Gabi15g00001 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Gabi15g00001 980 Gene3D Ribonuclease Inhibitor 368 633 IPR032675 -
Gabi15g00001 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 147 234 - -
Gabi15g00001 980 Pfam Leucine rich repeat 444 501 IPR001611 GO:0005515
Gabi15g00001 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 347 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi15g00001 Gabi-Chr15 9287 13415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi15g00001 27 978 Receptor kinase-like Gene Family AT5G65700 58.203 0.0 1105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi15g00001 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi15g00001 - - gmx:100803075 1677.14