Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1598g00001 ATGGATAAAAAGGGCTTCTCATGCCTTCTCTCTTGGTTTCTGATTTTTTTGCTTCTGCAGCTACAGATACAAAGAGGAAGTGGGTCAAATGCAACATCGAAAGGAGTGATCAAGTTGAGAGTAGGGGTACCCAAGAAAGATGGTTTCACCCAATTTGTGAAAGTTGTTTGGGACTCTCATGAAAAGAAGTACAATGTCTCTGGATATTGCATGGATGTTTTCAATGCCGTTGTAAACCTCTTACCCTTCAAGGTTTCTCTAGAAATCGAACCATTTGTTAATGAATCAAGAGAGACTGCTGGATCATACGATACACTTGTCCAACAGGTCCCAACAAAGTATGATGTTGTGGTAGGGGATGTAACAATCGTGGCCAATCGTTCAAAATCTGTAGATTTCACACTGCCATTTACAGAATCAGGAGTTACAATGCTAGTACCAGTTCAACATGACAAACACAAAACCATGTGGATTTTTGTCAAACCCTTCAGCTGGGATCTTTGGTTAAGCATAGTCATAGTTTCTATGTTCATAGGGATTGTCATACTCATCATGGAAAGAAATGTAAATTCCCTCCCTAATCAGGAAGGTTCACCAAATCGAAAACAGCTCAGCGCATTAAACATATTATGGTTTCCAATATCACAAGCCGTTCTTCCTGAAAGACAGGTAGTCGCCAAGAACTGTTCCAGATTTGTTTTGATGGTTTGGCTTCTATTGGCGTTTGTCCTCATGCAAAGTTACACTGCAAACCTGACATCTATATTGACCTTAGATCAGCTGCAACCAAGTTTTCTTAGAGTGGATGATCTAAAAAATGGGGATTATTATGTTGGATATCAAACTGGCTCTTTCGTTTATGATATGTTGGTACAGCGATGGAAGTTTAACCCATCAAAGCTGAGGGCTTATAGCAACATTTCTGAGTATCACCATGCTCTAAATATTGGAAGCCAACGTGGGGGTGTAGCAGCTATATTTGATGAACTACCCTACCTTAAAGTCTACCTTAAAAAATTTGGATCCAATTACATCATGACCGGCCCCACCTATCGAACTGATGGGTTTGGTATTGCATTCCCTTTAAACTCAAATCTTACCGCTCACTTTTCAAGAGCAATCTTGAATGTGACTGAAAGTGATTTAATGGATAAGATTGAGGAAAAATATTTTGGGAAGAATGAAGGAGGAGGACAAGGACAAGACCAGCCTGCCCAATTGTCTTCCGCAACTCCAAGTCTCACCTTTTATAGCTTTGCAGGGCTCTTCTTGATCACCGTGGTTGCTAATTTATTAGCATTACTCGTCTCAGAAACTTTTATTTGGCAAAGACCCATTTTGATGGCTAAAACATACAGTCAGAGGTATTTGTTCCGCACTCCAACTTCCAAAGAAACAAGTGTTCATTCAAGTCATGATTCAACGCAGGGAATAGAAGCCGTTTAA 1446 0.4004 MDKKGFSCLLSWFLIFLLLQLQIQRGSGSNATSKGVIKLRVGVPKKDGFTQFVKVVWDSHEKKYNVSGYCMDVFNAVVNLLPFKVSLEIEPFVNESRETAGSYDTLVQQVPTKYDVVVGDVTIVANRSKSVDFTLPFTESGVTMLVPVQHDKHKTMWIFVKPFSWDLWLSIVIVSMFIGIVILIMERNVNSLPNQEGSPNRKQLSALNILWFPISQAVLPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLRVDDLKNGDYYVGYQTGSFVYDMLVQRWKFNPSKLRAYSNISEYHHALNIGSQRGGVAAIFDELPYLKVYLKKFGSNYIMTGPTYRTDGFGIAFPLNSNLTAHFSRAILNVTESDLMDKIEEKYFGKNEGGGQGQDQPAQLSSATPSLTFYSFAGLFLITVVANLLALLVSETFIWQRPILMAKTYSQRYLFRTPTSKETSVHSSHDSTQGIEAV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1598g00001 481 CDD GluR_Plant 38 391 - -
Gabi1598g00001 481 Pfam Ligand-gated ion channel 394 429 IPR001320 GO:0015276|GO:0016020
Gabi1598g00001 481 SUPERFAMILY Periplasmic binding protein-like II 13 394 - -
Gabi1598g00001 481 SMART GluR_14 38 393 IPR001320 GO:0015276|GO:0016020
Gabi1598g00001 481 Pfam Bacterial extracellular solute-binding proteins, family 3 63 393 IPR001638 -
Gabi1598g00001 481 Gene3D - 342 397 - -
Gabi1598g00001 481 Gene3D - 157 302 - -
Gabi1598g00001 481 Gene3D - 35 156 - -
Gabi1598g00001 481 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 444 IPR015683 -
Gabi1598g00001 481 FunFam Glutamate receptor 2.7 34 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1598g00001 Gabi-Chr1598 5260 7291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1598g00001 38 461 Ion Channels AT5G11210 37.907 1.46e-89 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1598g00001 K05387 - gmx:100811144 669.848