Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1596g00007 ATGGCCAACGACTCGTCGTTTTTATTCGCCGGCATTCGTTTCGATAGAAAGAAATTCAGCACCGATATTGCCAGGTTCCAGAAAAAAGATAGCGATGATAGCTCGGTGAATATTTCGAATGCGGTTGAAGATGAAAGCGAGAAAACAAGAGAAGCAGTGGAAGAGAGAGCACCGTCTGCGAAGAAGAGGAAGCGCAAGGGAACGAAAGAAACGATTGAAGGATTCAATGTGTTCAGAAATTCGACATCTGAGACACTGTCGAACGATGAAGTTCGAGATGATGATGAGTCCATTCAGCTGAAGAATAAGAAGAAGGAACTAAATAGGCAACTTGAGCGCGATGCAATCTTCAGGAAGAAACACAACATTCATGTCTCTGGTTATAATGTGCCGTCACCGCTTCAAAACTTTGATGAGTTGAGAACAAGATATAAATGTCGATCATATTTATTGCGCAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAAAGGCAGGCTATCCCAATACTTTTACATGGCCGTGAATGCTTTGCTTGTGCTCCAACTGGCTCTGGAAAAACCTTTGCATTTGTGTGTCCCATACTTATGAAGCTAAAGGATCCAGCTAAAGGTGGCATTCGAGCTGTTATCCTTTGTCCTACCCGAGAATTATCTGCACAAACATATCGAGAGTGCAAAAAGCTAGCTAAAGGCAAAAAATTTCATATCAAGTTAATAACTAAACAGCTTGTAAGAAATGCTGATTTTTCGAAATTTCCATGTGATATACTTATATCCACACCACTTCGTTTACGCTTGGCTATCCGGAGGAAAAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAATCCGATAAGCTATTTGAGCCTGTATTGTTCAAGCAGATTGATTCTGTTATCAAAGCATGCTCGAACCCCTCCATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTAATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCCGAAACAATAAAGCAAAAATTGGTTTTTACCGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGTTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACGTGGGTTCTGATTGCTACTGATGTAGTGGCTCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTTCCAGATTCTGCTGCTGCATATGTCCACAGGATTGGTCGTTCTGGGAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAGAAGAAGATATTCCGCTTCTGCGGAATGTAGCTAATCTTATGGCAGCATCTGGCTGTGAGGTTCCATCCTGGCTCATGGAGTTGCGCAAAAAGAAATGGAAGAAACACCGCCCTAAAAGAGATTCTATATCAACCAAACCAGAGCTATAA 1599 0.419 MANDSSFLFAGIRFDRKKFSTDIARFQKKDSDDSSVNISNAVEDESEKTREAVEERAPSAKKRKRKGTKETIEGFNVFRNSTSETLSNDEVRDDDESIQLKNKKKELNRQLERDAIFRKKHNIHVSGYNVPSPLQNFDELRTRYKCRSYLLRNLAELGFREPTPIQRQAIPILLHGRECFACAPTGSGKTFAFVCPILMKLKDPAKGGIRAVILCPTRELSAQTYRECKKLAKGKKFHIKLITKQLVRNADFSKFPCDILISTPLRLRLAIRRKKIDLSRVEYLVLDESDKLFEPVLFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRTGEAITFYTEEDIPLLRNVANLMAASGCEVPSWLMELRKKKWKKHRPKRDSISTKPEL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1596g00007 532 MobiDBLite consensus disorder prediction 43 68 - -
Gabi1596g00007 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 485 IPR027417 -
Gabi1596g00007 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 340 IPR014001 -
Gabi1596g00007 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 512 IPR001650 -
Gabi1596g00007 532 SMART ultradead3 158 355 IPR014001 -
Gabi1596g00007 532 SMART helicmild6 392 473 IPR001650 -
Gabi1596g00007 532 CDD DEADc_DDX52 150 343 IPR044764 GO:0003724|GO:0005524|GO:0030490
Gabi1596g00007 532 Gene3D - 81 339 IPR027417 -
Gabi1596g00007 532 Pfam Helicase conserved C-terminal domain 370 473 IPR001650 -
Gabi1596g00007 532 MobiDBLite consensus disorder prediction 26 68 - -
Gabi1596g00007 532 Gene3D - 340 517 IPR027417 -
Gabi1596g00007 532 Pfam DEAD/DEAH box helicase 163 327 IPR011545 GO:0003676|GO:0005524
Gabi1596g00007 532 CDD SF2_C_DEAD 352 482 - -
Gabi1596g00007 532 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 60 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1596g00007 Gabi-Chr1596 216501 221654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1596g00007 133 511 Eukaryotic Initiation Factors Gene Family AT3G19760 30.971 3.70e-55 189