Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1596g00004 ATGGGAAAAGTTTCAGCTAATCGTTTCGATAACAGGGAGAGTTCCAGCAAAAGGCTTCGGATGGTTCATAATGAGCAACTGGAAGATGAAGAGGAAGAAGAAGTTAATAGTAAAGACCTTATTGGTTCTGCAACAAAGGCTTTGGATAGTTCTATTTGTGTGACGCTCTCTGACCCTGACGTGCTTGATTGCTCCATTTGTTATGAACCCTTGACTATTCCTGTCTTCCAGTGTGAAAACGGTCACATTTCTTGCTCTATTTGCTGTTCTAAAATTGGGTACAAGTGTGGCATGTGCTCAATGCCCATTGGCTTCAACCGTTGCCGAGCCATTGAGAAAGTATTGGAATCTATTAAAATATCATGTCAGAATGCAAAGTATGGTTGCAAAGAGACATTAAGTTACAGTGACAAGAATAACCATGAAAGGAAATGCATACATGTACCATGTTCCTGTCCGATTTCAGGTTGTGACTTTGTTGCCTCATACAAGGAGTTATCCATTCACTTCAGCCATGAACATGGGGCTTCATCAACCCAATTTTCATACAATTACTCTTTCTATGTCTCATTGAAGTCTGATGATGATGAAATCATTATTCTTCAAGAGAAAACTGATGGCAAAATGTTTATTCTCAACCATAATGTTATGCGCCTGGGTAATGTAGTCAATATTAGCTGCATTGGGCCTAACTCTCATCATTATGATATCATAGCTAAGTCTTCGGGGTGCAGTTTGAAGTTAGAGGCTGCTACTAAGAACGTTCAAGGGTGCATTTTAGATGCTTGTCTCTCATCAGAGTTTCTTATGATTCCTTCGAATTATTTTGGTGGTTCTAAATATCCTCTCAAATTGGAAATTTGCATTAAGCGCAACTACAGTGCTACACATTATGAACGAACAAATAGTCATAAAATTACAAAGAGCGTTACTTTTTGTGAGATGGAGAAACCCCCGATTGATGAACAGGGAAATGTGGAAGGAACCAGTTCCAGCAGCACCATCAACACCACTCGGCGTCCGAGGAACCCGATTGAGGAATTGGAAATGCTTGGTTACTTGAGTGATACAGAAGAAGAAGAAGAAGCAGAATATGTGGAGAGAGAAGAAGAATTTGATGATGAAGAAGTAAATGAAGAGGATGATGGTGATGAAGCGGAAGAAGATATGAACAATGATGAGGCCAATGATGGTTTTGTTGTAGCAGGTGTTGATAGAAAAGTTGTTGTGCCAACTTTTGAACCAAAGGTTTCAGATAAGTCCATTCAAGCGACTCTTTATGACCCTGACGTGCTTGATTGCTACATCTGTTCTGAACCTTTGACTATTCCAGTTTTCCAGTGCATCAATGGGCATATTGCTTGCTCCTCATGCTGTTCCAAACTTGTGCATAAGTGTCCCTTCTGCACAATGCCAATTGATTACAACCGTTGCCTTGCTATAGAGAAAGTACTAGTGTCACTTCAAACAGCATGCCAAAATGCAACATATGGTTGTGATGAGATAATAAGGTACAACAAGAAATATGAGCATGAGAAGACATGCATCTACGTACCATGTTCATGTCCACAACTAGGTTGCAACTTTGTTGCCATGTCAAACGACTTATATCTCCACTTCAAGGAAAATCATATGAATGAGGAAATTAAATCATTTAAATATGATGAATTTTTCTCTGTCTTGCTAAGCCGTAATGAGGACACCATTGTTCTTCAAGCGCAAACTGATGGCAAACTGTTTGTACTAAAAAATAAGGTATTTGAGAATCTGGGTAATGCAGTGACTATTTGTCACATTGGACCTAATTCACTATACCCGGTTTCTCATTATGAAATTAAAACAAAGTCTGAGGTGGAAAACAAATTTCTACACTACCGTTCTTCTGCCAAAAACATTCAAGGCCGCACATTTGTCATATCTTCATCAACAAAGTTTCTTTTGATTCCATTGGAATTTTTCAATTCTAATGGACAACTCGTACTGGAAATTCGCATAAGTTTATCTCACTTAAAGTTGAAGGCAGTCCATTTGTGTTAG 2037 0.3883 MGKVSANRFDNRESSSKRLRMVHNEQLEDEEEEEVNSKDLIGSATKALDSSICVTLSDPDVLDCSICYEPLTIPVFQCENGHISCSICCSKIGYKCGMCSMPIGFNRCRAIEKVLESIKISCQNAKYGCKETLSYSDKNNHERKCIHVPCSCPISGCDFVASYKELSIHFSHEHGASSTQFSYNYSFYVSLKSDDDEIIILQEKTDGKMFILNHNVMRLGNVVNISCIGPNSHHYDIIAKSSGCSLKLEAATKNVQGCILDACLSSEFLMIPSNYFGGSKYPLKLEICIKRNYSATHYERTNSHKITKSVTFCEMEKPPIDEQGNVEGTSSSSTINTTRRPRNPIEELEMLGYLSDTEEEEEAEYVEREEEFDDEEVNEEDDGDEAEEDMNNDEANDGFVVAGVDRKVVVPTFEPKVSDKSIQATLYDPDVLDCYICSEPLTIPVFQCINGHIACSSCCSKLVHKCPFCTMPIDYNRCLAIEKVLVSLQTACQNATYGCDEIIRYNKKYEHEKTCIYVPCSCPQLGCNFVAMSNDLYLHFKENHMNEEIKSFKYDEFFSVLLSRNEDTIVLQAQTDGKLFVLKNKVFENLGNAVTICHIGPNSLYPVSHYEIKTKSEVENKFLHYRSSAKNIQGRTFVISSSTKFLLIPLEFFNSNGQLVLEIRISLSHLKLKAVHLC 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1596g00004 678 ProSiteProfiles Zinc finger SIAH-type profile. 117 175 IPR013010 GO:0008270
Gabi1596g00004 678 MobiDBLite consensus disorder prediction 324 341 - -
Gabi1596g00004 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 170 IPR013083 -
Gabi1596g00004 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 540 IPR013083 -
Gabi1596g00004 678 SUPERFAMILY TRAF domain-like 117 290 - -
Gabi1596g00004 678 MobiDBLite consensus disorder prediction 352 393 - -
Gabi1596g00004 678 ProSiteProfiles Zinc finger SIAH-type profile. 487 545 IPR013010 GO:0008270
Gabi1596g00004 678 Pfam Seven in absentia protein family 107 192 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi1596g00004 678 Pfam Seven in absentia protein family 477 661 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi1596g00004 678 MobiDBLite consensus disorder prediction 10 26 - -
Gabi1596g00004 678 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 291 IPR044286 -
Gabi1596g00004 678 SUPERFAMILY TRAF domain-like 487 665 - -
Gabi1596g00004 678 MobiDBLite consensus disorder prediction 319 393 - -
Gabi1596g00004 678 CDD RING-HC_SIAHs 62 100 - -
Gabi1596g00004 678 CDD RING-HC_SIAHs 432 469 - -
Gabi1596g00004 678 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1596g00004 Gabi-Chr1596 181747 195863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1596g00004 430 544 C3H Transcription Factor Family AT2G41980 36.752 2.30e-18 84.7