Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1594g00002 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGATCAGATATGTTACGTACAATGCGGATTCTGTACTACCATTTTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTCAGATGCGGGCATTGCACGAGCCTCCTCTCTGTCAATATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAATCATCTTGAGCCAAAAGAAGGTAGTCCAGAAGAAGATGCAAACAAGACTTTGAAAAGTCATAGTGCATCCATGATGACCTATTCTGATTGTGAAGAAGATGATGTAATTCCAATGAGCAATGTCGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCCAATTTCCCTCCAACTCAGTTCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGACTCCAATGTGGACGTTCATGATGCTGAGGTCAATGAAGAAGGTCAAGGTTTCCGGGGAAGAAAGGTCCCAAGGAATTCTATCTTGGAAAGGACACCGTTTGAGTGA 642 0.4315 MSTLNHLFDLPDQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLNHLEPKEGSPEEDANKTLKSHSASMMTYSDCEEDDVIPMSNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQFKGDEESCSQTDQLVDSNVDVHDAEVNEEGQGFRGRKVPRNSILERTPFE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1594g00002 213 PANTHER PROTEIN YABBY 6-RELATED 11 175 IPR006780 GO:0007275
Gabi1594g00002 213 MobiDBLite consensus disorder prediction 188 213 - -
Gabi1594g00002 213 FunFam Axial regulator YABBY 4 108 174 - -
Gabi1594g00002 213 Gene3D High mobility group box domain 110 182 IPR036910 -
Gabi1594g00002 213 Pfam YABBY protein 11 164 IPR006780 GO:0007275
Gabi1594g00002 213 SUPERFAMILY HMG-box 109 162 IPR036910 -
Gabi1594g00002 213 CDD HMG-box_SF 120 163 - -
Gabi1594g00002 213 MobiDBLite consensus disorder prediction 188 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1594g00002 Gabi-Chr1594 27601 29731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1594g00002 2 213 C2C2-YABBY Transcription Factor Family AT1G23420 57.333 1.75e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gabi1594g00002 YABBY 1.7e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1594g00002 K25796 - gmx:100804172 389.037