Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi158g00007 ATGGCACAACCAGCACCATCTTCTTCTTCTTCTCCTTTTACCTATGATGTCTTTCTGAGCTTTCATGGAAAAGATACTCGCTTTGGATTTACTGGTAATCTTTATGATAAACTCTGTCAAAGGGGAATCCGCACCTTCATTGATGACGTGGAGCTTCCGAGAGGGGATGAAATCACACCATCACTTATCAACGCAATTGAAAACTCGAGGACTGCCATCATAGTCTTCTCTAAGAACTATGCATCTTCCTCTTTTTGCTTAGATGAACTTGTCAACATCATTGCCTGCATCAAAGATAAGGGTCGGTTTGTTTTGCCTGTTTTTTATGACGTGGAGCCCTCTGATGTGAGGCATCAGAGAGGTAGCTATGAAGAAGCACTGGCTCTTCATGAGAAGAGGTTCAAGGATGACACTGACAATAAGGAGAAGCTGCAAAAATGGAGGATGGCTCTGCGTCAAGCAGCTGACTTGTCTGGCCATCATTTGAAACTTGGGGTTGGGTATGAATATCAGTTTATTGAGAAGATCATTAAAGATGTCTCCAACAAGATTAATCCTGCTCCTTTACATGTTGCGGATTGCCTAGTCGGACTGGAATCTCGAGTGCTGGAAGTAAAGAAGCTTCTGGATATCAGCTCCGACAGAGTTCACATCGTAGGGATCCATGGAATTGGGGGAATAGGGAAAACAACGCTTGCATGGGCAGTTTATGATTCAATTGCTGTCTGTTTTGACAGTGTGTGTTTTCTGGAGCGTGTGAGAGAGAATTCAAATACATATCTCCAAAAGATGCTTCTTTCTAAACTAACTGGAGAGAAGGATATTATATTTACAAGTGCCAGAGAAGGAATTTCGGAAATAAGAAAAAGGTTACGTCAGAAGAAGGTTCTTTTGGTTCTTGATGATGTTAACGCATCAGAGCAGTTGCATGATTTGGTTGGAGAACCTAATTGGTTTGGTCTTGGCAGCAGAGTGATCATTACCACTCGGGACAAACACTTGCTAGCAAGACATGGGGTTGGAAAAACATATGAGGTAGATGAGTTGAATAAGACAGAAGCTCTTGAATTGTTTAGGAGGAATGCTTTCAAAAATAATGTAGTTCCTGGAAGTTTTGAGGATATAATAAACCGTGCAGTAACTTATGCTTCTGGCCTTCCACTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTCTAAAAGAATGGAAGTCTGCATTAGATAGGTATGAAAGGATTCCTAATGAAGAGGTCCAAAAGATACTTAAAGTAAGCTTTGATGCTTTAAAGGAAGATGAGAAGAGTGTTTTTCTTGATATTGCTTGTTGCTTCAAAGGTTATCGACTGATAGAGGTTGAAGATAAATTTCATGCTCATCATGGTGACTGCATGACATATCACATTAGAGAGCTGATTGAAAAGTCTCTCATAAAGATTAGTAAGGATGACAAGGTGACACTACATGACTTGATAGAGGATATGGGTAAAGAAATTGTTCGACAAGAGTCACCGAAAGAGCCTGGGAAACGCAGTAGATTGTGGTTCCATAAAGATATAGTTCAAGTTTTAGAAGGCAATATGGGAACGAGTAATATTGAAATTATATATCTGGTGGATTTCCCCAAATATGAAGGAGTGAATTGGAATGGAAATGCCTTCAAGAAGATGACAAATCTAAAAACACTTATTATTAGAAATTGTCATTTTTCGGAAGGTCCTAAACAATTTCCAAATTGTTTGAGAGTGCTGGAATGGTGGGGGTTTACTATACAGTCTTTACCTTCTAATTTTCATCCAAGAAGACTTTCCATATTCAGGTTACCATATAGTTCCTTAATGTCACTCCATTTGGCAAAGTCTCTGAAGCAAATGGTGAATTTAAGATATTTGGATCTCTCCGGGTGTAACTATATAACAGAGATACCTGATGTATCTAGTGTCCCGAATTTAGAAGAAATGTCATTTCCAGGATGCATCAATTTGATCAAAATTCATGAATCGATTGGATTCTTGGATAAACTTAGAATCTTGAATGCTTTTGGTTGCAGATCTCTTAAGAGTTTTCCACCTATCAAGTTGACCTCTCTTCAAGAACTTCGTCTTTCATATTGCTCTAGTCTTGAGAGTTTTCCAGAAATATTAGGAGAGATGAAAAATATAACAGAGCTTTATTTGCATGGTACTTCCATAAAAGAATTGCCATTTTCAATTCGGAATCTTACTCGGCTACAAAAGATAGAACTGATCAATAACTTTGAACGGGTCCAGGTGGAAGTTCTAAGTCTCATTGTCGGGTTTCCAGAACTTGAGCAATTGACCGTTGAGGAATGTAAAGGGTTGCAATTTTCTAAACAGGATGATAGCAAAGAAAAAGTGAGCTCAAACGTGAAACTTTCATGGCTTCATCTCCGATGTTGCAAGATATCAGATGACTTCCTTCGAACAGGTCTCACTTGGTTTGCCAACATTAAAGAGTTAGACCTGTCTAACAATATTTTCACAATTCTTCCAGCATGCCTGAAGGAATGTCACTTTTTGAAGCAACTTTTTTTGAACAGGTGCATGCTTCTTCAAGAAATAAGAGGGATTCCACCCAACTTAGAAATATTCTTTGCAATAGGATGCATCTCATTGGAAGAATTGGACCTCAATGAATGTCGCTTTTTGAGGAATCTTATCTTGGATTATTGCAAGAATCTTCGAGATATTAGAGGAATTCTGCGGAACTTGGAATTTCTCTCTGCAATAGAATGCCCATCATTGACTTCCCAGTGTGCAAGCATGTTAATGAATGAGGTTCCTATTTTATTACATACCAGAGATAATGCAATTCATCTTGGAATTTCTGTTACTCCGGTGTCCACTATAACTAATAAACCAGAACTGATTTTGGGCAAGTTGGAAGATATAAACTCTTTGGTATCTTCTCCGGTGTGTTTGGACTTACATCTAACAGTTGCCGTCTGCTTTGCAGAGGACATACCTGAGGGAGAGAGCTTAGTTATGATTATATTTGCTGCAAGGGAAGAATTATCAAAGTTGGGTGTATCAGTTGCAACTGTGGTTCTCGACAACGCATTTTGCATACTTAAGTTCGAAGATGCCAATTCCAGCAGGAAATTTCTGTGTCCTTTAAGAGAAACACAAGAAGAATCCCTTGTTACATGTATCCATGAGTACCATGATAAAGACTCTGCCGTACTTATTGACTCTCAGATTGCTTATGAGTTATTTGTAACTTTCCGAGGCCCAGATACTCGCCACGGTTTTACTGGCTATCTCTATAATGCTCTTCTTAACAGTGGAATCCACACCTTCATTGATGACGAGAAGCTTCAGAAAGGGGACGAAATCACACCATCACTTCTCAAGGCTATTCAACAGTCCAGGATTGGTAGGTTGGTTTTGCCTGTTTTCTATGACGTGGATCCTTCTGATGTGCGATATCAGAGAGGTAGTTACGGAGAAGCACTGGCTAAACATAAGGAGAGGTTCAAGGATAACATGCAGAGGTTGCATAGATGGACAACGGCTTTGGAGCAAGTGGCTAACTTGTCTGGTTTTCATTTCAAACATGGGGATGGATATGAGTACGAGTTTATTGGGAGGATTGTCAAAGAGATTTCCGGCAAGATTAATCGTGCTCCTTTACATGTTGAGGATCACCCTGTTGGACTAGAGTCTAGATTGTTAGAAGTAAAGGCGCTTCTAGATCTTGGATCAGATGATGGAGTCCACATGGTAGGGATATATGGTATTGGCGGAATCGGTAAAACGACAATTGCTCGAGCAGTTTATAATTTGATTGCTGACCAATTTGATAATTTGTGTTTTCTTCATGACGTGAGAGAAAATTCAATAAAACATGGCTTGCAACATCTTCAAGAGATGCTCCTTTCTAAAATTGTTGGATTAAACATTAAGTTAGGAGATGTCAACGAAGGAATTCCAATAATACAACAAAGATTATGTCGAGAGAAGGTTCTTTTGATTCTTGATGATGTTGACACATTGAAGCAGTTACAGGCTATGATAGGAAGACCGGACTGGTTTGGTCCGGGCAGCAGAATCATCATCACGACTAGGGACAAAAAGGTCCTAGCATGTCACGAGGTTATAAGAACATATGAGGTGAAGGAGTTGAATGAGAAAGATGCTCTTGAATTGCTTAGATGGAAAGCTTTTAAAAATAACAAAGTTAGTCCATGTTACTTGGATGTTTTAAATCGTGCAGTAACTTATGCTTTTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTAAAAGAATGGAAGTCTGCATTGGATAGGTATGAAAGGATTCCTAATGAAGAGATCCAAAAGATACTTAAGGTAAGCTTTGATGCTTTAGAGGAAGATGAGCAGAGTGTTTTTCTTGATATCGCTTGTTGCTTTAAGGGGTATCCATTGGTGGAGGTTGAAGATATACTTCATGCTCATCATGGTGACTGCATGACATATCACATAGGAGTGTTGGTTGAAAAATGTCTCATAAAGATTAGTTCTTGTGGTGAGTTGACACTACATGACTTGATAGAGGATATGGGTAAAGAAATTGTCCGAAAGGAGTCAGCAAAAGAGCCTGGGAAACGCAGTAGACTATGGTTCCATGAAGATATAGTTCAAGTTTTTGAAGACAATACAGGAACTAGTAATATTGAAATGATATATCTGCACTTCCCAAAATTTGAAGAAGTAGTGAAGTGGGATGGAAAGGCCTTCAAGAAGATGACAAACCTAAAAACACTTATTATTAAAAATGGTCATTTTTCGGAAGCTCCTAAACAATTTCCAAAGTGTTTAAGAGTGCTGGAATGGTGGCGGTTTCCTTCACAGTCTTTACCATCTAATTTGCATCCAACAAATCTTGCCATATTCAGGTTACCAGGAAGTTCCTTAATGTTACTTGAGTTGGCCAAGTTTTTGAAGAAGTTCATGAATATAAGAGTTTTGGATTTCAGCAAGTGTGAATGTATAACAGAGATACCTGATGTATCTGGTGTCCCAAATTTAGAAAAAATATCAGTTAAGGAATGTGTGAATTTAACTAAAGTTCATGAATCAGTTGGATTCCTAGATAAACTCAAATTCTTAAATGCTTTTGGTTGCCGCAAGCTTAGGAGTTTCCCACCTATCAAGTTGACCTCTCTTAAAGAATTGGAACTTTCATATTGCTCGAGTCTTGAGATTTTTCCAGAAATATTAGGAGAGATGGAAAATGTTACAGAGCTTTATTTGGTGGGAACTCCCATAAAAAGATTGCCTTTTTCAATTCGATATCTTACACGGCTACAAGAGATAGAACTGCATTCATGTGTATGGGTTCAGATAGAACTTCCAAGTAGCATTGTCATGTTATCAGAACTTGAGCGGTTGTGTTTTGGGACATGTGATGGGTTGCATTTATCTAAACAAGATGAAGGTGAAGAAAAAGTGAGCTCAAACATGGAACGTCTTCATCTCCAAGACTGCAACATATCAGATGAATTCCTTAGAATAGGTCTCACTTGTTTTGCCAATGTGAAACAGTTAGACCTGTCTGACAATAGTTTCACAATTCTTCCGGCGTGCATCAAAGAATGTCGCTTTTTGAGGGAACTTAATTTAAATAGATGCAGGCTTCTTCAAGAAATCAGAGGGATTCCACCCAACTTGGAATTATTCCGTGCACAATATTGTACATGTAACACCCCGTTCTAG 5745 0.3875 MAQPAPSSSSSPFTYDVFLSFHGKDTRFGFTGNLYDKLCQRGIRTFIDDVELPRGDEITPSLINAIENSRTAIIVFSKNYASSSFCLDELVNIIACIKDKGRFVLPVFYDVEPSDVRHQRGSYEEALALHEKRFKDDTDNKEKLQKWRMALRQAADLSGHHLKLGVGYEYQFIEKIIKDVSNKINPAPLHVADCLVGLESRVLEVKKLLDISSDRVHIVGIHGIGGIGKTTLAWAVYDSIAVCFDSVCFLERVRENSNTYLQKMLLSKLTGEKDIIFTSAREGISEIRKRLRQKKVLLVLDDVNASEQLHDLVGEPNWFGLGSRVIITTRDKHLLARHGVGKTYEVDELNKTEALELFRRNAFKNNVVPGSFEDIINRAVTYASGLPLALEVIGSNLFGKSLKEWKSALDRYERIPNEEVQKILKVSFDALKEDEKSVFLDIACCFKGYRLIEVEDKFHAHHGDCMTYHIRELIEKSLIKISKDDKVTLHDLIEDMGKEIVRQESPKEPGKRSRLWFHKDIVQVLEGNMGTSNIEIIYLVDFPKYEGVNWNGNAFKKMTNLKTLIIRNCHFSEGPKQFPNCLRVLEWWGFTIQSLPSNFHPRRLSIFRLPYSSLMSLHLAKSLKQMVNLRYLDLSGCNYITEIPDVSSVPNLEEMSFPGCINLIKIHESIGFLDKLRILNAFGCRSLKSFPPIKLTSLQELRLSYCSSLESFPEILGEMKNITELYLHGTSIKELPFSIRNLTRLQKIELINNFERVQVEVLSLIVGFPELEQLTVEECKGLQFSKQDDSKEKVSSNVKLSWLHLRCCKISDDFLRTGLTWFANIKELDLSNNIFTILPACLKECHFLKQLFLNRCMLLQEIRGIPPNLEIFFAIGCISLEELDLNECRFLRNLILDYCKNLRDIRGILRNLEFLSAIECPSLTSQCASMLMNEVPILLHTRDNAIHLGISVTPVSTITNKPELILGKLEDINSLVSSPVCLDLHLTVAVCFAEDIPEGESLVMIIFAAREELSKLGVSVATVVLDNAFCILKFEDANSSRKFLCPLRETQEESLVTCIHEYHDKDSAVLIDSQIAYELFVTFRGPDTRHGFTGYLYNALLNSGIHTFIDDEKLQKGDEITPSLLKAIQQSRIGRLVLPVFYDVDPSDVRYQRGSYGEALAKHKERFKDNMQRLHRWTTALEQVANLSGFHFKHGDGYEYEFIGRIVKEISGKINRAPLHVEDHPVGLESRLLEVKALLDLGSDDGVHMVGIYGIGGIGKTTIARAVYNLIADQFDNLCFLHDVRENSIKHGLQHLQEMLLSKIVGLNIKLGDVNEGIPIIQQRLCREKVLLILDDVDTLKQLQAMIGRPDWFGPGSRIIITTRDKKVLACHEVIRTYEVKELNEKDALELLRWKAFKNNKVSPCYLDVLNRAVTYAFGLPLALEVIGSNLFGKSVKEWKSALDRYERIPNEEIQKILKVSFDALEEDEQSVFLDIACCFKGYPLVEVEDILHAHHGDCMTYHIGVLVEKCLIKISSCGELTLHDLIEDMGKEIVRKESAKEPGKRSRLWFHEDIVQVFEDNTGTSNIEMIYLHFPKFEEVVKWDGKAFKKMTNLKTLIIKNGHFSEAPKQFPKCLRVLEWWRFPSQSLPSNLHPTNLAIFRLPGSSLMLLELAKFLKKFMNIRVLDFSKCECITEIPDVSGVPNLEKISVKECVNLTKVHESVGFLDKLKFLNAFGCRKLRSFPPIKLTSLKELELSYCSSLEIFPEILGEMENVTELYLVGTPIKRLPFSIRYLTRLQEIELHSCVWVQIELPSSIVMLSELERLCFGTCDGLHLSKQDEGEEKVSSNMERLHLQDCNISDEFLRIGLTCFANVKQLDLSDNSFTILPACIKECRFLRELNLNRCRLLQEIRGIPPNLELFRAQYCTCNTPF 1914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi158g00007 1914 SUPERFAMILY L domain-like 489 924 - -
Gabi158g00007 1914 Pfam NB-ARC domain 202 430 IPR002182 GO:0043531
Gabi158g00007 1914 Pfam NB-ARC domain 1236 1464 IPR002182 GO:0043531
Gabi158g00007 1914 SUPERFAMILY L domain-like 1574 1909 - -
Gabi158g00007 1914 Gene3D - 1072 1133 IPR035897 -
Gabi158g00007 1914 Gene3D Ribonuclease Inhibitor 1538 1750 IPR032675 -
Gabi158g00007 1914 Gene3D Ribonuclease Inhibitor 713 934 IPR032675 -
Gabi158g00007 1914 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 714 IPR044974 GO:0006952
Gabi158g00007 1914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 442 IPR027417 -
Gabi158g00007 1914 SMART till_3 1076 1187 IPR000157 GO:0007165
Gabi158g00007 1914 SMART till_3 14 157 IPR000157 GO:0007165
Gabi158g00007 1914 SUPERFAMILY Toll/Interleukin receptor TIR domain 1072 1190 IPR035897 -
Gabi158g00007 1914 PRINTS Disease resistance protein signature 383 397 - -
Gabi158g00007 1914 PRINTS Disease resistance protein signature 624 640 - -
Gabi158g00007 1914 PRINTS Disease resistance protein signature 290 304 - -
Gabi158g00007 1914 PRINTS Disease resistance protein signature 218 233 - -
Gabi158g00007 1914 SMART AAA_5 215 349 IPR003593 GO:0016887
Gabi158g00007 1914 SMART AAA_5 1246 1379 IPR003593 GO:0016887
Gabi158g00007 1914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1215 1476 IPR027417 -
Gabi158g00007 1914 ProSiteProfiles TIR domain profile. 1075 1214 IPR000157 GO:0007165
Gabi158g00007 1914 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 186 - -
Gabi158g00007 1914 Gene3D - 185 341 IPR027417 -
Gabi158g00007 1914 Gene3D - 1214 1376 IPR027417 -
Gabi158g00007 1914 ProSiteProfiles TIR domain profile. 13 184 IPR000157 GO:0007165
Gabi158g00007 1914 Gene3D - 1382 1466 IPR042197 -
Gabi158g00007 1914 Gene3D - 348 432 IPR042197 -
Gabi158g00007 1914 Gene3D Ribonuclease Inhibitor 1751 1910 IPR032675 -
Gabi158g00007 1914 SUPERFAMILY "Winged helix" DNA-binding domain 1453 1559 IPR036390 -
Gabi158g00007 1914 Pfam BspA type Leucine rich repeat region (6 copies) 635 724 IPR026906 -
Gabi158g00007 1914 Pfam BspA type Leucine rich repeat region (6 copies) 1789 1885 IPR026906 -
Gabi158g00007 1914 Pfam TIR domain 1136 1216 IPR000157 GO:0007165
Gabi158g00007 1914 Pfam TIR domain 15 188 IPR000157 GO:0007165
Gabi158g00007 1914 Pfam TIR domain 1076 1134 IPR000157 GO:0007165
Gabi158g00007 1914 Pfam Leucine Rich Repeat 824 845 IPR001611 GO:0005515
Gabi158g00007 1914 Gene3D - 1134 1213 IPR035897 -
Gabi158g00007 1914 Gene3D - 13 184 IPR035897 -
Gabi158g00007 1914 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515
Gabi158g00007 1914 Gene3D Ribonuclease Inhibitor 532 712 IPR032675 -
Gabi158g00007 1914 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 159 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi158g00007 Gabi-Chr158 126539 139285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi158g00007 2 783 WRKY Transcription Factor Family AT4G12020 30.247 6.80e-80 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi158g00007 - - gmx:100780257 1060.06