LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi158g00003	ATGGATTCAGATCAAGGAAAAGTGTTCATTGGTGGGATTTCTTGGGACACAACAGAGGAGAAGCTGAAAGAGTATTTCGGGAACTACGGTGATGTCTCTCACGCTTCCGTCATGAGAGAGAAGAACACTGGCAAACCCAGAGGCTTCGCTTTCGTCGTCTTTTCCGATCCTTCCATTCTCGACAATCTTCTCCAAGACAAGCACGTTATCGACGGAAGAACCGTTGATGTCAAGAGAGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCCAGAACTGGAAATCCCAATACTAGGAATTCTGGAAATGGTGGTAATATCAGGACCAAAAAAATATTTGTTGGAGGGTTGCCTCCTACCCTGACCGAAGAAAAATTTCGTCAATACTTTGAGGCTTATGGCCCGGTAACTGATGTGGTAGTCATGTATGACCAGATTACTGGACGAACTAGAGGATTTGGTTTTATTTCTTTTGAAAGTGAAGATGCAGTTGATAGAGTTTTGCACAAGTCATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTGGTGGTGGTGGTGGTGGCGGCGGCAGTGGTGGGTATCAGGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTCGGATGGATTCCAGTAGGTATATGCAGCCTCAAAACACTGCAGGTGGATTCCCACCTTATGGCTCTTCTGGGTATAGTGCTCCTGGGTATGGGTATGGTCCGGCTAATAGTGCCATTAGTTATGGTGCGTATGGAAGCTATGGTGCTGCTGCTGCTGGGTATGGTGGACCTGCTGGCGCAACATATGGGAATCCAAATGTCCCTAATGCTGCTTATGTTGGTGGTCCCCCGGGTGGCGCAAGGAGTTCATGGCCTGCTCAGGCGCCCTCTGGTTATGGTTCAATGGGCTATGGGAACACCGCCCCTTGGGGTGCTGCAAGTGGTGGTGCTGGATCTGCTGTTGGTGTCCCTGGTTCAGCATCTGCAGGTCAATCCCCTAGTGGAGTTGCTGGATATGGGAATCAAGGTTATGGATATGGTGGGTATGGTGGGAGTGATAATTCTTATGGGAACCCAGGTGTGTATGGTGCTGTCGGAGGGCGTTCTGGGAGTGCCCCAAATGTTAATGCTAGTGGTCCAGTCGGGAGTGAACTACAAGGTAGTGGCGGTAGCTATATGGGTAGTGGCTATAGCGATGCAAATGGGAATTCAGGGTATGGAAATGCAGCATGGAGATCTGAACCAACTCAGTCATCAGGACATTATGGTACTCCTCAGGGAAATGGTGCTCATGCTGGACAAGGTGGTTATGGTGGTGGCTATGGCAGTGCTCAGTCCCGACAAGCCCAACAGCAGTAA	1413	0.4912	MDSDQGKVFIGGISWDTTEEKLKEYFGNYGDVSHASVMREKNTGKPRGFAFVVFSDPSILDNLLQDKHVIDGRTVDVKRAFSREDQQISVTSRTGNPNTRNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGPVTDVVVMYDQITGRTRGFGFISFESEDAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRGGGGGGGGSGGYQGYGASGGNQNAYDGRMDSSRYMQPQNTAGGFPPYGSSGYSAPGYGYGPANSAISYGAYGSYGAAAAGYGGPAGATYGNPNVPNAAYVGGPPGGARSSWPAQAPSGYGSMGYGNTAPWGAASGGAGSAVGVPGSASAGQSPSGVAGYGNQGYGYGGYGGSDNSYGNPGVYGAVGGRSGSAPNVNASGPVGSELQGSGGSYMGSGYSDANGNSGYGNAAWRSEPTQSSGHYGTPQGNGAHAGQGGYGGGYGSAQSRQAQQQ	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi158g00003	470	MobiDBLite	consensus disorder prediction	86	110	-	-
	Gabi158g00003	470	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1	1	470	-	-
	Gabi158g00003	470	MobiDBLite	consensus disorder prediction	86	108	-	-
	Gabi158g00003	470	CDD	RRM2_Hrp1p	112	189	-	-
	Gabi158g00003	470	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	6	82	IPR000504	GO:0003723
	Gabi158g00003	470	FunFam	heterogeneous nuclear ribonucleoprotein 1	106	226	-	-
	Gabi158g00003	470	SUPERFAMILY	RNA-binding domain, RBD	110	218	IPR035979	GO:0003676
	Gabi158g00003	470	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	111	188	IPR000504	GO:0003723
	Gabi158g00003	470	Gene3D	-	107	225	IPR012677	-
	Gabi158g00003	470	SMART	rrm1_1	112	184	IPR000504	GO:0003723
	Gabi158g00003	470	SMART	rrm1_1	7	78	IPR000504	GO:0003723
	Gabi158g00003	470	MobiDBLite	consensus disorder prediction	393	443	-	-
	Gabi158g00003	470	MobiDBLite	consensus disorder prediction	180	224	-	-
	Gabi158g00003	470	MobiDBLite	consensus disorder prediction	393	470	-	-
	Gabi158g00003	470	Gene3D	-	4	88	IPR012677	-
	Gabi158g00003	470	FunFam	Heterogeneous nuclear ribonucleoprotein 1	5	87	-	-
	Gabi158g00003	470	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	8	75	IPR000504	GO:0003723
	Gabi158g00003	470	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	113	179	IPR000504	GO:0003723
	Gabi158g00003	470	SUPERFAMILY	RNA-binding domain, RBD	3	107	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi158g00003	Gabi-Chr158	12249	15313	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi158g00003	8	198	Eukaryotic Initiation Factors Gene Family	AT2G23350	22.727	2.50e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi158g00003	K14411		-	gmx:100811267	611.298