Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1587g00001 ATGAACCTTGATTGGGAACAAGAACTGAGGAAGTATCACAATGTTATAGCCTCAGGGACAAAGTCTATGCAAATAAAAGCCATGGTTATGTTGGCCCGTTTCTCTAAACATGCCCCTGAGCGTGTATTAGCTCAGACCATACCCCTTCTCACTGAGATTCTTGGTCATGATATCTCAAATGATTCTGCTCCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGTATTGCTTGCAGAGGTGATGGTGGGTTGGCAATTGAAATAGGTGGACATGGTGCTACACATTCTTTGATAAGGTTGTTGCCTCATTCTGATGGGAAGATGCAGAAAGTCCTGATAAAATGTTTGCTTCTTGTTGTCACTTTTTGTAATTCAAGTAGGACAGTTGTTGCTACCAATGGTGGGTTAGAAATCATCATCAGTTTGTTGAATTCTTGCTCCAATGATGTTAGGCGGTATTTGTTAGAGATTTTGAGTTTGTTGGCATTGAGGAGGGATGTTAGGAAGGCACTCACTAGACTAGGAGCTCTTCATTTTCTTGTGGAGGCTGCTGGTTGTGGCAGCATGGTTTCTAGGGAAAGAGCTTGTCAATCTATTGGGTTGCTTGGAGTCACAAGACAGGCTAGGCGTACCCTTGTTGATTTGGGAGTGATACCGGTGCTTGTGGAGCTGTTTCGCGATGGAGATCAAGCCACGAAAATTGTAGCTGGTAACTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTCCTTCAAGGACCTGATCATGCTGGTAAGGAGATAGCTGAGGATGTGTTTTGTATATTGGCTGTTGCGGAGGCTAATGCTGTTGAAATTGCCGGGCACCTGGTGAGAGTTCTTAGACAAGGTGATGATGATGCAAAGGCAGCCGCGGCTGATGTGATATGGGATCTGTCAGGTTATAAGCACTCAACATCTGTGGTCCGTGATTCGGGTGCAATCCCTATCCTTGTTGAGCTTTTGGGGAGTGGAAGTGAAGAGGTAAAGGAGAATGTTTCTGGGGCATTTGCTCAGCTAAGCTATGATGGAGGTGATAGAATAGCACTTGCCAATGCAGGGGCAATTCCAATTCTCATTGACTTGCTGCATGATGAGATTGAGGAACTAAGGGATAATGCTGCTGAGGCTCTTGTCAATTTTTATGAAGATCCATTATACCATGATAGAGTATCTGATGCAATTAATGTTCCTTCATTCAGAAATATGCAGAATAGACTAATTCATATTCGCGCATCAAACGAGCATATGGCTAGATCCTTACGAAGAATGAGTGTTGAGCAGCTCACTTGGAACCCAGATCTTGTATAA 1377 0.4394 MNLDWEQELRKYHNVIASGTKSMQIKAMVMLARFSKHAPERVLAQTIPLLTEILGHDISNDSAPSLQEAAAYCLKCIACRGDGGLAIEIGGHGATHSLIRLLPHSDGKMQKVLIKCLLLVVTFCNSSRTVVATNGGLEIIISLLNSCSNDVRRYLLEILSLLALRRDVRKALTRLGALHFLVEAAGCGSMVSRERACQSIGLLGVTRQARRTLVDLGVIPVLVELFRDGDQATKIVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLQGPDHAGKEIAEDVFCILAVAEANAVEIAGHLVRVLRQGDDDAKAAAADVIWDLSGYKHSTSVVRDSGAIPILVELLGSGSEEVKENVSGAFAQLSYDGGDRIALANAGAIPILIDLLHDEIEELRDNAAEALVNFYEDPLYHDRVSDAINVPSFRNMQNRLIHIRASNEHMARSLRRMSVEQLTWNPDLV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1587g00001 458 Pfam Armadillo/beta-catenin-like repeat 328 363 IPR000225 GO:0005515
Gabi1587g00001 458 Pfam Armadillo/beta-catenin-like repeat 369 402 IPR000225 GO:0005515
Gabi1587g00001 458 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 4 415 - -
Gabi1587g00001 458 SMART arm_5 324 364 IPR000225 GO:0005515
Gabi1587g00001 458 SMART arm_5 206 246 IPR000225 GO:0005515
Gabi1587g00001 458 SMART arm_5 280 323 IPR000225 GO:0005515
Gabi1587g00001 458 SMART arm_5 365 405 IPR000225 GO:0005515
Gabi1587g00001 458 SMART arm_5 124 164 IPR000225 GO:0005515
Gabi1587g00001 458 SMART arm_5 34 79 IPR000225 GO:0005515
Gabi1587g00001 458 Gene3D - 323 441 IPR011989 -
Gabi1587g00001 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 403 IPR000225 GO:0005515
Gabi1587g00001 458 Coils Coil 382 402 - -
Gabi1587g00001 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Gabi1587g00001 458 SUPERFAMILY ARM repeat 16 411 IPR016024 -
Gabi1587g00001 458 Gene3D - 9 322 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1587g00001 Gabi-Chr1587 6051 8151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1587g00001 206 420 U-box Gene Family AT2G23140 27.928 2.52e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1587g00001 - - gmx:100819735 741.88