LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1587g00001	ATGAACCTTGATTGGGAACAAGAACTGAGGAAGTATCACAATGTTATAGCCTCAGGGACAAAGTCTATGCAAATAAAAGCCATGGTTATGTTGGCCCGTTTCTCTAAACATGCCCCTGAGCGTGTATTAGCTCAGACCATACCCCTTCTCACTGAGATTCTTGGTCATGATATCTCAAATGATTCTGCTCCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGTATTGCTTGCAGAGGTGATGGTGGGTTGGCAATTGAAATAGGTGGACATGGTGCTACACATTCTTTGATAAGGTTGTTGCCTCATTCTGATGGGAAGATGCAGAAAGTCCTGATAAAATGTTTGCTTCTTGTTGTCACTTTTTGTAATTCAAGTAGGACAGTTGTTGCTACCAATGGTGGGTTAGAAATCATCATCAGTTTGTTGAATTCTTGCTCCAATGATGTTAGGCGGTATTTGTTAGAGATTTTGAGTTTGTTGGCATTGAGGAGGGATGTTAGGAAGGCACTCACTAGACTAGGAGCTCTTCATTTTCTTGTGGAGGCTGCTGGTTGTGGCAGCATGGTTTCTAGGGAAAGAGCTTGTCAATCTATTGGGTTGCTTGGAGTCACAAGACAGGCTAGGCGTACCCTTGTTGATTTGGGAGTGATACCGGTGCTTGTGGAGCTGTTTCGCGATGGAGATCAAGCCACGAAAATTGTAGCTGGTAACTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTCCTTCAAGGACCTGATCATGCTGGTAAGGAGATAGCTGAGGATGTGTTTTGTATATTGGCTGTTGCGGAGGCTAATGCTGTTGAAATTGCCGGGCACCTGGTGAGAGTTCTTAGACAAGGTGATGATGATGCAAAGGCAGCCGCGGCTGATGTGATATGGGATCTGTCAGGTTATAAGCACTCAACATCTGTGGTCCGTGATTCGGGTGCAATCCCTATCCTTGTTGAGCTTTTGGGGAGTGGAAGTGAAGAGGTAAAGGAGAATGTTTCTGGGGCATTTGCTCAGCTAAGCTATGATGGAGGTGATAGAATAGCACTTGCCAATGCAGGGGCAATTCCAATTCTCATTGACTTGCTGCATGATGAGATTGAGGAACTAAGGGATAATGCTGCTGAGGCTCTTGTCAATTTTTATGAAGATCCATTATACCATGATAGAGTATCTGATGCAATTAATGTTCCTTCATTCAGAAATATGCAGAATAGACTAATTCATATTCGCGCATCAAACGAGCATATGGCTAGATCCTTACGAAGAATGAGTGTTGAGCAGCTCACTTGGAACCCAGATCTTGTATAA	1377	0.4394	MNLDWEQELRKYHNVIASGTKSMQIKAMVMLARFSKHAPERVLAQTIPLLTEILGHDISNDSAPSLQEAAAYCLKCIACRGDGGLAIEIGGHGATHSLIRLLPHSDGKMQKVLIKCLLLVVTFCNSSRTVVATNGGLEIIISLLNSCSNDVRRYLLEILSLLALRRDVRKALTRLGALHFLVEAAGCGSMVSRERACQSIGLLGVTRQARRTLVDLGVIPVLVELFRDGDQATKIVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLQGPDHAGKEIAEDVFCILAVAEANAVEIAGHLVRVLRQGDDDAKAAAADVIWDLSGYKHSTSVVRDSGAIPILVELLGSGSEEVKENVSGAFAQLSYDGGDRIALANAGAIPILIDLLHDEIEELRDNAAEALVNFYEDPLYHDRVSDAINVPSFRNMQNRLIHIRASNEHMARSLRRMSVEQLTWNPDLV	458

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1587g00001	458	Pfam	Armadillo/beta-catenin-like repeat	328	363	IPR000225	GO:0005515
	Gabi1587g00001	458	Pfam	Armadillo/beta-catenin-like repeat	369	402	IPR000225	GO:0005515
	Gabi1587g00001	458	PANTHER	ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4	4	415	-	-
	Gabi1587g00001	458	SMART	arm_5	324	364	IPR000225	GO:0005515
	Gabi1587g00001	458	SMART	arm_5	206	246	IPR000225	GO:0005515
	Gabi1587g00001	458	SMART	arm_5	280	323	IPR000225	GO:0005515
	Gabi1587g00001	458	SMART	arm_5	365	405	IPR000225	GO:0005515
	Gabi1587g00001	458	SMART	arm_5	124	164	IPR000225	GO:0005515
	Gabi1587g00001	458	SMART	arm_5	34	79	IPR000225	GO:0005515
	Gabi1587g00001	458	Gene3D	-	323	441	IPR011989	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1587g00001	Gabi-Chr1587	6051	8151	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1587g00001	206	420	U-box Gene Family	AT2G23140	27.928	2.52e-11	63.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1587g00001	-		-	gmx:100819735	741.88

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