Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1582g00008 ATGTCTTCCTCTCTCATCTGTAGGAAGAGAAAACGATGCCCCAAGGTTTTCAGGTTTCACTCCTTCGCTGACCATGGTTGCCCCATCGCACCTTCTGGTCCCTTCCGCGACAACGTTCGCTTATTTCTTCAAGAAGCGGCACAACCCCAAGATTACACTGTCTCTGGCAACCCCCTATGGTGCACCCTTCTCATTCTCAACCGCGACAACACTAACCTAACGGCTCCTCTCTACACCATCGAAGAGGACGTTTCCCGTTCTTCCAATCCCTTCTGCGATCATTGCCGCTGTGTAGGTTGGAGCGGCCATTATGTATCAAAGAGACGATACCATTTCATAATCCCGATGGACAATGGGTGGCATAAACCCTTAAGTGAAGGTGCTCTGGATAATCAGAGTCATCTCTTGCATGGGGTTATTCACTGCAATGGATACGGCCATTTGCTTCGTCTCAATGGCGTAGAAGGGGGTTCTAGAGTTCTCGGTGGGAGAGAGATCATGGATCTCTGGGACAGGATCTGCATCAATCTTGGAGCAAGGAAAATTACAGTGGAAGATGCCTCAAGGAAGAGGTCTATGGATCTTCGGTTACTTCATGGAGTTGCTTATGGGCACTCTTGGTATGGTCGGTGGGGCTATAGATTTTGCCGTGGAAGCTTCGGTGTAACTGAGCAAAATTACTATGAAGCAATTGAGGCTCTTGGTACTTTGGAGCTTGAAAAGATTGTAAAAGATTTCAGCGAGACAAAGTGCCACAAAAAAATCAAACAAATGATTCGCTGCTATAGAGATATGAGTGAAGCTCAGATTATCACAATCAGAGATCTTCTCAGGTTTATGCTTACTGTCAGGTCTCGTGCTCCTGTTTCTAAGATAGCAGAAATTTCTGCTGCTGCTCCTCCCATGAAGGAAAAATCTGCTAGGTATAAGAAGTTCAGCTGTGCAGTGACTTCTATGGATGGCAGGTGGCCAACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTTGATGTACTTAAAGAGCACAAGGCTGCCCAATCAGGTTCTTGTGGGATGACAAGGCAAGATGTGAGAGATGCATCTCGGCTCCACATTGGTGATACGGGCTTACTGGATTATGTGCTGAAATCACTTAACAATGTGATTGTTGGAAATTTTGTTGTTCTTCGCAAGGTGAACCCATCAACTCGGATCCTGGAATATACTATTGATGAGCTTGGCAAGGGGTTCAAAGCCCCTGAACTGGAGTCTGGGGTAATGGCTGTTGTAGATCCCCAAGTAGAATCATCTTGGGTTCCTGGTAATGATGTCTACAATGATGTGTCTTATCTGTACAAAAATGTACTATTAGGCTACCTTGATTCAGAACCAGTGGACTTGGCAGCTCGGACAATTCTTGACAGCAGGCACTTCGTGAAGGAGTGGGCTTTTAGGGATGAAATGGAGCAGGTATTGACATCCATCTGCCACTTGAAGCTAAATTTTGTGGACACTGAGTCTGAGTTGAAAGGGCTACCTTGTGGCGAGATTGTTATGGTTCCACTGCAAGCAACGGTTGGAGACTTGAAGCAAGCTGCTGAGGCTGCTCCGAGGGATACTTATTGCATTGCAGAAAGACTTATAGTGACAGAAATTGCAGAATTGATGGATGCAAGTGATGAGGAGGTCCTTTTGGGACTAATCCAGTCTGGTGTGGAACTTTCTGTGAAGGGTATTGCCATAGATTTGTGTACTCCATTGAAGTACCAGGGAGCGTCTGACAATTCGAAGGTGAGGTGTGCATGTGGTGCTCGTGACGATGATGGTGAAAGAATGGTGGCTTGTGACATCTGTGAAGTGTGGAAGCATACACACTGCTGTGGAATCGATGACTCAGAGACAGTGCCACCATTTTTTGCATGCCCTGGCTGTTGGGATTCACTTATACCCCCAAGGATGGAATCCGGCTTCAGTCTGAATTGTGCTGATGATTTTCTGATTCCAAGGGTCTATAGTCTCTAG 2001 0.4623 MSSSLICRKRKRCPKVFRFHSFADHGCPIAPSGPFRDNVRLFLQEAAQPQDYTVSGNPLWCTLLILNRDNTNLTAPLYTIEEDVSRSSNPFCDHCRCVGWSGHYVSKRRYHFIIPMDNGWHKPLSEGALDNQSHLLHGVIHCNGYGHLLRLNGVEGGSRVLGGREIMDLWDRICINLGARKITVEDASRKRSMDLRLLHGVAYGHSWYGRWGYRFCRGSFGVTEQNYYEAIEALGTLELEKIVKDFSETKCHKKIKQMIRCYRDMSEAQIITIRDLLRFMLTVRSRAPVSKIAEISAAAPPMKEKSARYKKFSCAVTSMDGRWPTRRLEFAAQVIVDVLKEHKAAQSGSCGMTRQDVRDASRLHIGDTGLLDYVLKSLNNVIVGNFVVLRKVNPSTRILEYTIDELGKGFKAPELESGVMAVVDPQVESSWVPGNDVYNDVSYLYKNVLLGYLDSEPVDLAARTILDSRHFVKEWAFRDEMEQVLTSICHLKLNFVDTESELKGLPCGEIVMVPLQATVGDLKQAAEAAPRDTYCIAERLIVTEIAELMDASDEEVLLGLIQSGVELSVKGIAIDLCTPLKYQGASDNSKVRCACGARDDDGERMVACDICEVWKHTHCCGIDDSETVPPFFACPGCWDSLIPPRMESGFSLNCADDFLIPRVYSL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1582g00008 666 CDD PHD_MMD1_like 593 637 - -
Gabi1582g00008 666 Pfam PHD-finger 592 637 IPR019787 -
Gabi1582g00008 666 SUPERFAMILY FYVE/PHD zinc finger 585 643 IPR011011 -
Gabi1582g00008 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 642 IPR013083 -
Gabi1582g00008 666 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1582g00008 Gabi-Chr1582 155203 166492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1582g00008 6 643 PHD Transcription Factor Family AT5G22260 33.479 4.08e-117 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1582g00008 PHD 5.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1582g00008 K26271 - gmx:100797388 967.992