Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1581g00010 ATGGATCCGGACATTTCACGGTGGGTCCTCGAATTTCTTCTCCGGAGTTCCGTTCCCGATTCCCTGATCCACAAAACCCTCACCGTCCTTCCTCTCTCCGGCGCCGATAACCGCCTCAAGAAAACCCTCCTCCTCCGCACTCTCCAATCTCACCTCCTCAAAGCCTCTCTCACCGAAACCGCACTCGAAATTTTCGAGGTTCTCGAGGACCTCGACCGGAACGACGCTGTTCCCGTCACCGACGCCATGCGCCAAGCCTACTGCGCTGTCGCCGTCGAGTGCACAGTCAAGTACCTCGCCGCGTCCCCCGACGAATCCGCCGGCGAGTACTTCGGCGCCGTCCGGAGGATCTGGCGGGGCCGGGTGACGGAGATGACGGCGGAGGGTCGCCGGAGTGGGTTGTTCTCCGGCGAGTTGACCCGGTGGAGGGATGACATTGAGGCTGCGCTTTGGGATCATGGGGTTTCTGAGAGGTTGGCGAGTTTGAATAGCAGAAGGGACGCGCTGAAGAAGGTGAAGGTGTATCTGAATGAAGCGTGGGAAATCATGGGTCCTTCGTTTCTCGATTCCGTGGCGACGTTGTCGAAGGCGAATGGTTTGCGCCCTGAAGGTGTTTGTGAATATGCTTTGGGTGATGAATCGATGGGGAAGCGTGATGGAGGGATGGAGGGTTCAGCGAAGGAGAGAAGGGACTCTGTTGGTGGTGATAGGAGTGATTCTGATAATGATAATGATGATGACGATGCATGCTGCATGCAGAATGTGGCAGTGACGGGTGAAGTTCAGGGCAAGGAACAATTGGAAGAGAGAGTTGGAGCTTCTGTTGATACAAATCAGGAAGTGGGTGGGCTTGATTTACCAACACAGGGAAATAAAGGGCTTGATTTTCCAACACAGGGAAATAAAGGAATTCACAAATGCAATCTTCAGCTTAAACGCAAGCACTCTGCACTTCGTGCATGCCGTAGGGGTGTTAAAATATCTGGTGCTGAGGAAGTGGAGCCATTAAAATCGTGGGTGCCTAGTCCTGAAGTTGAAAAAGTTCGGGAATCCCTTAAATCAAGTTCTTTGGAGCTACGAGCATTGGTCAAGGATCCTCTTCCTGATGCAATGCATACGTCTGAAATTGTAAGATCCAAATTGGCAACAAAAGATGTTCCTCCTATTGAAAACCTGCGCGGAGACATAGATGTACCAGATTCAGATGTTTGCAAGAGTATTGTACCTTTTCAACCTGATAATGCCAATCTTGCCAAGAAGTCTTCTGTTCATTGTGGTAATGTTAATCGTCCCAACATAATGAAACGGACTAGTACTGCCCGTACTTATGAGTGGGATGATTCTATAGATAATTTGCCACAAGGAAGACAGCCAAGAAGGAGGAAAAGGAAATGGTCTTCATTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCGACAATTCGAAACTTCTACAGTAACATTTTTGAAAATAGAAGTGGAGTTGATCTGAAGGACAAATGGAGAAACATGATAAGGTGA 1542 0.4948 MDPDISRWVLEFLLRSSVPDSLIHKTLTVLPLSGADNRLKKTLLLRTLQSHLLKASLTETALEIFEVLEDLDRNDAVPVTDAMRQAYCAVAVECTVKYLAASPDESAGEYFGAVRRIWRGRVTEMTAEGRRSGLFSGELTRWRDDIEAALWDHGVSERLASLNSRRDALKKVKVYLNEAWEIMGPSFLDSVATLSKANGLRPEGVCEYALGDESMGKRDGGMEGSAKERRDSVGGDRSDSDNDNDDDDACCMQNVAVTGEVQGKEQLEERVGASVDTNQEVGGLDLPTQGNKGLDFPTQGNKGIHKCNLQLKRKHSALRACRRGVKISGAEEVEPLKSWVPSPEVEKVRESLKSSSLELRALVKDPLPDAMHTSEIVRSKLATKDVPPIENLRGDIDVPDSDVCKSIVPFQPDNANLAKKSSVHCGNVNRPNIMKRTSTARTYEWDDSIDNLPQGRQPRRRKRKWSSLEEETLRAGVKMFGEGNWATIRNFYSNIFENRSGVDLKDKWRNMIR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1581g00010 513 MobiDBLite consensus disorder prediction 211 250 - -
Gabi1581g00010 513 Gene3D - 454 513 - -
Gabi1581g00010 513 Pfam Myb-like DNA-binding domain 462 511 IPR001005 -
Gabi1581g00010 513 MobiDBLite consensus disorder prediction 272 291 - -
Gabi1581g00010 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 457 513 IPR017930 -
Gabi1581g00010 513 ProSiteProfiles Myb-like domain profile. 457 512 IPR001005 -
Gabi1581g00010 513 CDD SANT_TRF 463 513 - -
Gabi1581g00010 513 PANTHER MYB TRANSCRIPTION FACTOR 1 513 - -
Gabi1581g00010 513 SMART sant 461 513 IPR001005 -
Gabi1581g00010 513 MobiDBLite consensus disorder prediction 212 239 - -
Gabi1581g00010 513 SUPERFAMILY Homeodomain-like 458 512 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1581g00010 Gabi-Chr1581 189164 199072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1581g00010 465 512 Single Myb Histone (SMH) Gene Family AT1G15720 52.083 4.91e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1581g00010 Myb_DNA-binding 9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1581g00010 - - aprc:113849788 602.438