Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1581g00009 ATGGATCCGGACATTTCACGGTGGGTCCTCGAATTTCTTCTCCGGAGTTCCGTTCCCGATTCCCTGATCCACAAAACCCTCACCGTCCTTCCTCTCTCCGGCGCCGATAACCGCCTCAAGAAAACCCTCCTCCTCCGCACTCTCCAATCTCACCTCCTCAAAGCCTCTCTCACCGAAACCGCACTCGAAATTTTCGAGGTTCTCGAGGACCTCGACCGGAACGACGCTGTTCCCGTCACCGACGCCATGCGCCAAGCCTACTGCGCTGTCGCCGTCGAGTGCACAGTCAAGTACCTCGCCGCGTCCCCCGACGAATCCGCCGGCGAGTACTTCGGCGCCGTCCGGAGGATCTGGCGGGGCCGGGTGACGGAGATGACGGCGGAGGGTCGCCGGAGTGGGTTGTTCTCCGGCGAGTTGACCCGGTGGAGGGATGACATTGAGGCTGCGCTTTGGGATCATGGGGTTTCTGAGAGGTTGGCGAGTTTGAATAGCAGAAGGGACGCGCTGAAGAAGGTGAAGGTGTATCTGAATGAAGCGTGGGAAATCATGGGTCCTTCGTTTCTCGATTCCGTGGCGACGTTGTCGAAGGCGAATGGTTTGCGCCCTGAAGGTGTTTGTGAATATGCTTTGGGTGATGAATCGATGGGGAAGCGTGATGGAGGGATGGAGGGTTCAGCGAAGGAGAGAAGGGACTCTGTTGGTGGTGATAGGAGTGATTCTGATAATGATAATGATGATGACGATGCATGCTGCATGCAGAATGTGGCAGTGACGGGTGAAGTTCAGGGCAAGGAACAATTGGAAGAGAGAGTTGGAGCTTCTGTTGATACAAATCAGGAAGTGGGTGGGCTTGATTTACCAACACAGGGAAATAAAGGGCTTGATTTTCCAACACAGGGAAATAAAGTAGGAATTCACAAATGCAATCTTCAGCTTAAACGCAAGCACTCTGCACTTCGTGCATGCCGTAGGGGTGTTAAAATATCTGGTGCTGAGGAAGTGGAGCCATTAAAATCGTGGGTGCCTAGTCCTGAAGTTGAAAAAGTTCGGGAATCCCTTAAATCAAGTTCTTTGGAGCTACGAGCATTGGTCAAGGATCCTCTTCCTGATGCAATGCATACGTCTGAAATTGTAAGATCCAAATTGGCAACAAAAGATGTTCCTCCTATTGAAAACCTGCGCGGAGACATAGATGTACCAGATTCAGATGTTTGCAAGAGTATTGTACCTTTTCAACCTGATAATGCCAATCTTGCCAAGAAGTCTTCTGTTCATTGTGGTAATGTTAATCGTCCCAACATAATGAAACGGACTAGTACTGCCCGTACTTATGAGTGGGATGATTCTATAGATAATTTGCCACAAGGAAGACAGCCAAGAAGGAGGAAAAGGAAATGGTCTTCATTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCGACAATTCGAAACTTCTACAGTAACATTTTTGAAAATAGAAGTGGAGTTGATCTGAAGGACAAATGGAGAAACATGATAAGGTGA 1545 0.4945 MDPDISRWVLEFLLRSSVPDSLIHKTLTVLPLSGADNRLKKTLLLRTLQSHLLKASLTETALEIFEVLEDLDRNDAVPVTDAMRQAYCAVAVECTVKYLAASPDESAGEYFGAVRRIWRGRVTEMTAEGRRSGLFSGELTRWRDDIEAALWDHGVSERLASLNSRRDALKKVKVYLNEAWEIMGPSFLDSVATLSKANGLRPEGVCEYALGDESMGKRDGGMEGSAKERRDSVGGDRSDSDNDNDDDDACCMQNVAVTGEVQGKEQLEERVGASVDTNQEVGGLDLPTQGNKGLDFPTQGNKVGIHKCNLQLKRKHSALRACRRGVKISGAEEVEPLKSWVPSPEVEKVRESLKSSSLELRALVKDPLPDAMHTSEIVRSKLATKDVPPIENLRGDIDVPDSDVCKSIVPFQPDNANLAKKSSVHCGNVNRPNIMKRTSTARTYEWDDSIDNLPQGRQPRRRKRKWSSLEEETLRAGVKMFGEGNWATIRNFYSNIFENRSGVDLKDKWRNMIR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1581g00009 514 MobiDBLite consensus disorder prediction 211 250 - -
Gabi1581g00009 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 458 514 IPR017930 -
Gabi1581g00009 514 SUPERFAMILY Homeodomain-like 459 513 IPR009057 -
Gabi1581g00009 514 CDD SANT_TRF 464 514 - -
Gabi1581g00009 514 Gene3D - 455 514 - -
Gabi1581g00009 514 PANTHER MYB TRANSCRIPTION FACTOR 1 514 - -
Gabi1581g00009 514 ProSiteProfiles Myb-like domain profile. 458 513 IPR001005 -
Gabi1581g00009 514 MobiDBLite consensus disorder prediction 272 291 - -
Gabi1581g00009 514 SMART sant 462 514 IPR001005 -
Gabi1581g00009 514 MobiDBLite consensus disorder prediction 212 239 - -
Gabi1581g00009 514 Pfam Myb-like DNA-binding domain 463 512 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1581g00009 Gabi-Chr1581 189164 199072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1581g00009 466 513 Single Myb Histone (SMH) Gene Family AT1G15720 52.083 4.76e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1581g00009 Myb_DNA-binding 9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1581g00009 - - aprc:113849788 599.356