Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1581g00007 ATGACTAGAAAAAAGGTGAAACTCGCATTCATAGTCAATGATGCTGCAAGGAAGGCAACATACAAGAAAAGGAAGAAGGGTCTAATGAAGAAGGTGGATGAACTCACCACCCTTTGTGGCATTGAAGCATGTGCTATAGTTTATAGCCCATATGATTCTCAACCAGAGGTTTGGCCATCCCCATGGGGTGTCCAAAAGGCACTAGCCAAGTTCAGGACAATGCCTGAATTGGAGCAGAGCAAGAAGATGGTGAACCAAGAGACTTTCCTGAAACAAAGGATTCTGAAGGCTAAAGAGCAGGTGAAGAAACAAAACAAGGACAACAGGGAAAAGGAGATGACCTTGCTCATGCTTCAGTGCCTTAGTGCAGGGAAGCTTCTGCATGATAATTTGACCATGGTTGATTTGAATGATCTTGCATGGTTGATTGATCAGAACTTGAAGGATGTTGATCGAAGGTTGGAAACAATGAATAAGAATTCTCATATGACTCCAAGCCAAGCCCAAATGATAGCCCCTGTAGCCAAGAATGAATATATGACACCGGTGGATCATGGCCATGGGTTTGATATGAATGTTGACACCATGCAAAAACAGTGGTTTATGGACTTGATCAACAATAATGGGGATGAAACAATGCCATTTGGAGATGTCAATCTCCAAAATGGCTTTTGCCCTAACCCATTGCTTCCTTGA 696 0.4267 MTRKKVKLAFIVNDAARKATYKKRKKGLMKKVDELTTLCGIEACAIVYSPYDSQPEVWPSPWGVQKALAKFRTMPELEQSKKMVNQETFLKQRILKAKEQVKKQNKDNREKEMTLLMLQCLSAGKLLHDNLTMVDLNDLAWLIDQNLKDVDRRLETMNKNSHMTPSQAQMIAPVAKNEYMTPVDHGHGFDMNVDTMQKQWFMDLINNNGDETMPFGDVNLQNGFCPNPLLP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1581g00007 231 PANTHER MADS BOX PROTEIN 3 154 - -
Gabi1581g00007 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi1581g00007 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi1581g00007 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1581g00007 231 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gabi1581g00007 231 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Gabi1581g00007 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gabi1581g00007 231 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gabi1581g00007 231 Coils Coil 94 114 - -
Gabi1581g00007 231 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi1581g00007 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi1581g00007 231 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1581g00007 Gabi-Chr1581 180408 181103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1581g00007 1 183 Type I MADS-box Gene Family AT5G48670 59.563 1.98e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1581g00007 SRF-TF 8.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1581g00007 - - gmx:100813231 317.005