Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1581g00006 ATGACTAGAAAGAAGGTGGAGCTTACATACATAACCAATGACTCGAAGAGGAAGGCAGCATTCAAGAAAAGGAAAGATGGTTTGATGAAGAAGATTAATGAAATCAGCACCCTTTGTGGGATTGAAGCTTGTGCTATTATCTATGATCCAAATGATCCTAAGCCAGAGGTTTGGCCATCTCCATGTGGAGTTCAAAGTGTGGTGTCCAGGTTCAGGAGAATGCCTGAAGTGGAACAGAGCAAAAAGATGCTGAATCATGAGAGCTTCTTGAGGCAAAGGATCCAAAAAGCCCAAGAGCAGCTGAAGAAACAAATAAATGAAAACAGGAAGAAAGAGATGACCCATCTCATGTTTCAATACTTGGGTGCTGGGAAGATTTTTGACAATGCTAACATGACTGATTTGAATGATATCTCATGGTTGATTGATCAAAACCTGAAGGATATTGAACGAAAGATCAATCAAAGCCAAGCCCAAGAGGGGACATTAGTGGCTGAAAATGGATCTGAAACTGTGAGTGGAGAAAAGCAAGTACACATGGATCATGACCAAGGGCTAGAGACCAACATGGACGCCATGCAAAAGCAGAATTGGTCTATGAACTTTATCAATGGTGGTGGGGATGAGATGCTACCATTTGGAGCTGATATTGTCCAAAGTGGCCTATGGCCTAACCCATAA 681 0.42 MTRKKVELTYITNDSKRKAAFKKRKDGLMKKINEISTLCGIEACAIIYDPNDPKPEVWPSPCGVQSVVSRFRRMPEVEQSKKMLNHESFLRQRIQKAQEQLKKQINENRKKEMTHLMFQYLGAGKIFDNANMTDLNDISWLIDQNLKDIERKINQSQAQEGTLVAENGSETVSGEKQVHMDHDQGLETNMDAMQKQNWSMNFINGGGDEMLPFGADIVQSGLWPNP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1581g00006 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi1581g00006 226 PANTHER MADS BOX PROTEIN 3 153 - -
Gabi1581g00006 226 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gabi1581g00006 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi1581g00006 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi1581g00006 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1581g00006 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Gabi1581g00006 226 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi1581g00006 226 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Gabi1581g00006 226 Coils Coil 87 114 - -
Gabi1581g00006 226 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Gabi1581g00006 226 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1581g00006 Gabi-Chr1581 112357 113168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1581g00006 1 176 Type I MADS-box Gene Family AT5G48670 54.545 7.34e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1581g00006 SRF-TF 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1581g00006 - - gmx:100813231 286.189