Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1581g00004 ATGAGAAAGAAGGTGAAACTTGCGTTCATTGTCAATGATAAAGCAAGGAAGGTATCATACAAGAAAAGGCATAAGGGTCTATTGAAGAAGCTTGCTGAACTCACCATTCTTTGTGGGGTTGAGGCATGTGCTATAATTTATAGTCCATATGAATCTCAGCCAAAGGTTTGGCCATCCCAAAGGGGGGTCCAAAAGGTGATCAAAAAGTTCAGGTCTATTCCTGAATTTGAGCTAAGCAAGAGGATGCTGAACCAAGAGAGCTTTATGAAGCAGAAGGTCCAAAAGGCCAAAGATCAATTGGACAAAGTGAGAAAAGACAATAGGGAGAAGGAGATGTCTTTGCTCATGTTTCAATATCTTACTGAAGGAAATATTATTGACAATCTGAGCTTGGTTGATTTGAATGATCTGACATGTTTGATCAATGAGAACCTGAAGGAAATTGATTGGAGGATGAAAGAACTGAACAAGAAGGCTTCAACAACTCAGAACCAAGCTCAGGTGGCAGAACAAGTGGTGGCAGATGGAGCAACTAGGCAAGCAGAGGAGGCACAAGTGATGGATCATGGCCAAGGGTTTGAGATGAACATGGACGCTCCACAAAATGAGTCATGGATTTTGGACTGGATCAATGGTGCAGATGATGAAGTACTGATGCCATTTGGAGATGCCAATTACCCCAAAAATTGA 690 0.4174 MRKKVKLAFIVNDKARKVSYKKRHKGLLKKLAELTILCGVEACAIIYSPYESQPKVWPSQRGVQKVIKKFRSIPEFELSKRMLNQESFMKQKVQKAKDQLDKVRKDNREKEMSLLMFQYLTEGNIIDNLSLVDLNDLTCLINENLKEIDWRMKELNKKASTTQNQAQVAEQVVADGATRQAEEAQVMDHGQGFEMNMDAPQNESWILDWINGADDEVLMPFGDANYPKN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1581g00004 229 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Gabi1581g00004 229 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi1581g00004 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 50 IPR002100 GO:0003677|GO:0046983
Gabi1581g00004 229 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Gabi1581g00004 229 Coils Coil 86 113 - -
Gabi1581g00004 229 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Gabi1581g00004 229 FunFam agamous-like MADS-box protein AGL80 12 96 - -
Gabi1581g00004 229 Gene3D - 12 113 IPR036879 GO:0003677|GO:0046983
Gabi1581g00004 229 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Gabi1581g00004 229 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Gabi1581g00004 229 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Gabi1581g00004 229 PANTHER MADS BOX PROTEIN 2 152 - -
Gabi1581g00004 229 Coils Coil 145 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1581g00004 Gabi-Chr1581 56035 56724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1581g00004 2 169 Type I MADS-box Gene Family AT5G48670 48.810 1.73e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1581g00004 SRF-TF 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1581g00004 - - gmx:100813231 249.21