Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1581g00003 ATGGCCAGAAAAAAGGTGAAACTCGCATTCATAGTCAATGATGCTGCAAGGAAGGCGTCATATAAGAAAAGAGTGAAGGGTCTGTTGAAGAAGGTGAATGAACTCACCACCCTCTGTGGCATTGAAGCCTGTGCTATAATTTATAGTCAATATGATCCTAAACTAGTGGTTTGGCCTTCCCCATTTGGGGTCCACAGGGTACTGTCCAAGTTCAGGACAATGCCTGAATTGGAGCAAACCAAGAAGATGGTGAACCAAGAGACTTACCTGAATCAAAGAATTGCGAAGGCTAAAGAGCAGTTGAAGAAACAGATGAAGGATAACAGGGAGAATGAAATGAACCTGCTTATGATTCAGAGCCTTAGTGCAATGGAGATTCTGCATAATAATATGACCCTGGATGATTTGAATGATCTTTCATGGTTGATTGACCAGAACTTGAAGAATGTTGATCGAAGGTTGGAAACACTGAATAAGAATGCTGATATCTCTACAAGCCAACCCCAAATGGCAGCACCAATAGCCATGAATGAAGAAGTGACACTGGTGGATCAAGTCCATGGGTTGGATATGAATGCTGACACCATGCAAAAGCAAGGGTTTGTGAACTTGATCAATGGTAATGGGGATGGAACAATGCCATCCGGAGATGCCAATCTCCAAAATGGCTTTTGA 675 0.4252 MARKKVKLAFIVNDAARKASYKKRVKGLLKKVNELTTLCGIEACAIIYSQYDPKLVVWPSPFGVHRVLSKFRTMPELEQTKKMVNQETYLNQRIAKAKEQLKKQMKDNRENEMNLLMIQSLSAMEILHNNMTLDDLNDLSWLIDQNLKNVDRRLETLNKNADISTSQPQMAAPIAMNEEVTLVDQVHGLDMNADTMQKQGFVNLINGNGDGTMPSGDANLQNGF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1581g00003 224 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Gabi1581g00003 224 Coils Coil 147 167 - -
Gabi1581g00003 224 Coils Coil 91 115 - -
Gabi1581g00003 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi1581g00003 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Gabi1581g00003 224 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Gabi1581g00003 224 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi1581g00003 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi1581g00003 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1581g00003 224 PANTHER MADS BOX PROTEIN 3 150 - -
Gabi1581g00003 224 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Gabi1581g00003 224 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1581g00003 Gabi-Chr1581 49679 50353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1581g00003 1 166 Type I MADS-box Gene Family AT5G48670 59.524 1.62e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1581g00003 SRF-TF 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1581g00003 - - gmx:100816084 270.781