Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1579g00017 ATGCAGAGATCTGGGTATGGTTCTGATGGAATATACAGGTCTCCGAGACCTTCTCTCGTGTTACCTAAGGACCCTAACCTCTCTTTCGTTTCAAACCTTTTCACAAACGTTTCTTCCTTTCCCACCAAACCCGCTCTCATCGATGCTGATTCCTCCGAAACTCTAAACTTCGCAGAGTTAAAGTCCTTGGTCGTGAAAATCTCACACGGTCTTCTCCGCCTTGGCATAAACAAAAACGACGTCGTTCTCTTCCTCGCACCAAACAGCATCCACTACCCTGTTTGCTTCCTCGCCGTCGTTTCCCTCGGCGCCATCGTCTCCACCGTCAACCCAACCTACACCGCCGCCGAAGTTTCAAAGCAAGTGAAGGATTCCAATCCCAAGCTTGTAATCACCGTCGCTGAATTATGGGAAAAAGTCAAAGACTTCAACCTCCCCAGTGTCTTTCTGGATTCCCTCGCGACATCATCATCATCATCGGATCATCCCGAGGTCACGAGTTTCAAGGCGTTGGTTGAACTCGGTGGGTCCCAGACAGAGTTTCCGACCAACAACGTTAAACAGAGCGACACGGCGGCGCTTTTGTACTCGTCGGGGACGACGGGTATGAGCAAGGGTGTGGTTCTGACGCATGGGAATTTCATTGCTGCTTCTGCCATGATTACGATGGACGATGATTTGGATGGAGAGATGCACAATGTTTTCCTCTGTGTTCTGCCTATGTTTCATGTCTTCGGGCTTGCGGTTATTACCTGCGCTCAGCTTCAGAGAGGGAGTGCTGTGGTGTCTCTGAAGAGGTTCGAGTTCGAAGTTGTTTTGAAGACTATTGAGAAGTATAGAGTTACGCATTTATGGGTTGTGCCTCCCATTATGCTTGCTTTTGCGAAACATAGTTTGGTTGACAAATATGATCTTTCCTCGTTGAAGCAAATTGGTTCTGGTGCTGCACCTCTTGGCAAAGATTTGATGGTTGAGTGTGCCAAACGTTTCCCTCGTGTCAACATTTCTCAGGGCTACGGTATGACTGAAACTTCTGGGGTTGTTTCTAAGGAGCATTCAAGGATAGGGAATCGGCATTCTGGTTCAACAGGAGTGCTTGTTGCAGGAGTGGAAGCTCAAATAGTCAGTGTGGATACACTGAAACCCCTCCCTCCTGGACAGCTGGGGGAGATTTGGGTACGGGGTCCTAATATGATGAAAGGTTATCACAACAATCAAGACGCCACAAGATTGACCATAGATAAAAAGGGGTGGGTTCATACTGGAGATCTTGGATATTTTGATGAGGACGGACAACTTTTTGTTGTTGATCGTATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCGCACCCGGAAGTACTTGATGCTGTTGTAATCCCGTATCCGGACGCCGAAGCTGGCGAGGTTCCAGCTGCCTATGTTGTTCGTTCACCCAATAGTTCACTGACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTGCGAAGGGTGACATTCATCAACTCAGTTCCTAAGACAGCTTCAGGAAAAATTCTCCGAAGAGAGCTTATTGACAAAGCAAGATCCAAAATATGA 1632 0.4694 MQRSGYGSDGIYRSPRPSLVLPKDPNLSFVSNLFTNVSSFPTKPALIDADSSETLNFAELKSLVVKISHGLLRLGINKNDVVLFLAPNSIHYPVCFLAVVSLGAIVSTVNPTYTAAEVSKQVKDSNPKLVITVAELWEKVKDFNLPSVFLDSLATSSSSSDHPEVTSFKALVELGGSQTEFPTNNVKQSDTAALLYSSGTTGMSKGVVLTHGNFIAASAMITMDDDLDGEMHNVFLCVLPMFHVFGLAVITCAQLQRGSAVVSLKRFEFEVVLKTIEKYRVTHLWVVPPIMLAFAKHSLVDKYDLSSLKQIGSGAAPLGKDLMVECAKRFPRVNISQGYGMTETSGVVSKEHSRIGNRHSGSTGVLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMKGYHNNQDATRLTIDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEVLDAVVIPYPDAEAGEVPAAYVVRSPNSSLTEEDVQKFIANQVAPFKRLRRVTFINSVPKTASGKILRRELIDKARSKI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1579g00017 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Gabi1579g00017 543 CDD 4CL 21 535 - -
Gabi1579g00017 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 538 - -
Gabi1579g00017 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Gabi1579g00017 543 Gene3D - 9 440 IPR042099 -
Gabi1579g00017 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Gabi1579g00017 543 Pfam AMP-binding enzyme 35 445 IPR000873 -
Gabi1579g00017 543 Gene3D - 441 542 IPR045851 -
Gabi1579g00017 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 440 - -
Gabi1579g00017 543 SUPERFAMILY Acetyl-CoA synthetase-like 23 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1579g00017 Gabi-Chr1579 208289 212954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1579g00017 1 543 Monolignol Biosynthesis Gene Families AT4G05160 67.831 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1579g00017 K01904 - gmx:100797843 853.973