LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1579g00014	ATGGTGTCTGACGCTAGCAAGAAGAAGGCTGCTCAGAAGAAGGCGGCGGCGGCAGCCAAGAGAGGAGGCAAGGTACCTGCCGCCGTCGCTGCCGCTGCTACTGCCGCTTCATCAAAAACGGCGTCGGAGAAGGCAGCCGACAAGCTCGCCAACGGAATTGGTGATATTCAGATATCCGATCGGACATGCACCGGTGTCCTCTGCTCCCATCCTCTTTCCAGGGATATTCGGATAGAATCTCTCTCAGTTACTTTCCATGGACATGATCTCATTGTTGATTCTGAATTGGAGCTAAATTATGGGAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTGCTTACTGCAATAGGTTGCCGAGAGCTTCCTATTCCAGACCACATGGATATTTATCACCTTAGCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATATGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTGGCAGCACAGGATGATGGGGGTGGTGAAGCTCTTGAACGTATTTATGAACGATTGGAAGCCATGGATGCATCAACTGCAGAAAAGCGTGCTGCAGAAATCTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACATGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGCGCTCTTTTTATGAACCCGACTATTCTTTTACTTGATGAACCAACCAATCACCTCGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGATCGTATTCTAGTTGTGGTTTCACACTCCCAAGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAGCTGAAGCCCTATACTGGTAATTATGATCAGTATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCCCGATTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAGATGGAGCGGGGTGGACTTACAGAGAAGGTGGCAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCCGATAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTGGACTCTAGGATTGCTCTTGTTGGACCCAATGGAGCTGGGAAGAGTACGTTTCTAAAGCTAATGACAGGTGATTTGGTTCCTATAGACGGCATGGTTCGACGCCATAATCACCTTAGAATTGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAATTGTCTGCTCTCCAGTTTATGACAAAAGAATACCCTGGAAATGAGGAAGAGAAGATGAGAGCTGCTATTGGGAAGTTTGGACTGTCAGGTAAAGCGCAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGTTAGCTTATAGACAGCCTCACTTGCTACTTTTAGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCATTGGCCGAGGCATTAAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAACTGTGACCAGATGGCAGGGTGACATTATGGATTTCAAGGAGCATCTAAGGTCGAAGGCTGGTTGA	1800	0.4572	MVSDASKKKAAQKKAAAAAKRGGKVPAAVAAAATAASSKTASEKAADKLANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLSREIEASDMSALEAVICCDEERLRLEKEAEALAAQDDGGGEALERIYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTHDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKPYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPIDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMTKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWQGDIMDFKEHLRSKAG	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1579g00014	599	CDD	ABCF_EF-3	76	293	-	-
	Gabi1579g00014	599	ProSitePatterns	ABC transporters family signature.	220	234	IPR017871	GO:0005524\|GO:0016887
	Gabi1579g00014	599	FunFam	ATP-binding cassette sub-family F member 3	347	599	-	-
	Gabi1579g00014	599	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	70	320	IPR027417	-
	Gabi1579g00014	599	Pfam	ABC transporter	287	365	IPR032781	-
	Gabi1579g00014	599	FunFam	Abc transporter f family member 1	76	340	-	-
	Gabi1579g00014	599	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	20	597	-	-
	Gabi1579g00014	599	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	387	599	IPR003439	GO:0005524
	Gabi1579g00014	599	CDD	ABCF_EF-3	387	579	-	-
	Gabi1579g00014	599	Pfam	ABC transporter	403	534	IPR003439	GO:0005524
	Gabi1579g00014	599	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	371	581	IPR027417	-
	Gabi1579g00014	599	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	76	316	IPR003439	GO:0005524
	Gabi1579g00014	599	Gene3D	-	76	340	IPR027417	-
	Gabi1579g00014	599	MobiDBLite	consensus disorder prediction	1	25	-	-
	Gabi1579g00014	599	Gene3D	-	352	598	IPR027417	-
	Gabi1579g00014	599	SMART	AAA_5	100	293	IPR003593	GO:0016887
	Gabi1579g00014	599	SMART	AAA_5	412	579	IPR003593	GO:0016887
	Gabi1579g00014	599	Pfam	ABC transporter	94	248	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1579g00014	Gabi-Chr1579	175396	181084	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1579g00014	207	274	Calmodulin-binding Proteins	AT2G36910	41.429	8.96e-08	53.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1579g00014	K06185		-	gmx:100785099	1056.2