Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1579g00009 ATGTCTCACCAAGGCGAATCATCGGACACGAAATCGGGGAAGAAGGACTTCTCCACCGCGATTCTGGAGCGGAAGAAGTCGCCGAACCGGCTTGTCGTGGATGAGGCCGTCAACGATGACAACTCCGTCGTGGCCATGCACCCCCAAACCATGGAAAAACTTCAGCTTTTCCGAGGCGACACTATCCTCATCAAGGGCAAGAAGCGGAAGGATACAATTTGTATAGCTCTTGCCGATGATAACTTGGAGGAGCATAAGATCAGGATGAACAAAGTTGTGAGATCGAATTTGCGGGTTCGACTTGGAGATGTTGTGTCTGTGCACCAGTGTGCGGATGTCAAGTATGGGAAACGTGTGCACATTCTGCCAATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTATTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGGGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGTGGAGTATTGTGTGGTTGCTCCAGACACTGAAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAAAGACTGGATGAAGTTGGGTATGATGACGTTGGTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTTGAGCTTCCATTGAGGCATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTACTTTATGGACCCCCTGGTTCTGGGAAGACATTAATAGCGAGAGCTGTTGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCACCATCCATCATCTTTATTGATGAAATTGATTCTATTGCACCCAAGCGAGAGAAGACGCATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCCCGTGCTCATGTTATTGTCATTGGAGCTACTAATCGTCCAAATAGCATTGACGCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTCGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCTGATGATGTTGATTTAGAGAGAATTGCAAAAGATACTCATGGATATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGGGAGAAGATGGATGTCATTGACTTGGAGGATGAGACTATTGATGCTGAAATACTGAATTCTATGGCAGTTACAAATGAGCATTTCCAAACTGCGCTCGGAACGAGCAACCCATCAGCTTTGCGTGAAACTGTTGTTGAGGTGCCTAATGTCAGCTGGGAAGACATTGGAGGCCTTGAAAATGTCAAGCGTGAACTGCAAGAGACTGTTCAATATCCTGTTGAGCACCCAGAAAAGTTTGAGAAGTTCGGTATGTCACCATCAAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCGGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCAGCTCCGTGTGTACTCTTCTTTGATGAGCTTGACTCCATTGCTACTCAGGTTAGAGGAAGCAGTGTTGGGGATGCTGGCGGTGCTGCTGATAGAGTTTTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAGACCGTGTTCATAATTGGGGCAACAAACAGACCTGACATCATTGACCCAGCACTTCTTCGGCCAGGCCGTTTGGATCAATTGATCTATATTCCTCTTCCTGATGAGGATTCCCGACATCAAATCTTCAAAGCCTGCTTGAGAAAGTCACCTATCTCGAAAGATGTTGATTTGAGAGCATTGGCTAGGTATACACAAGGGTTCAGTGGTGCTGATATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAAAAGGACATAGAGCAAGAGAGGAGGAGGCGGGAAAACCCCGAGGCCATGGATGAAGACATCATGGATGAAGAAGTTGCAGAGATCAAAGCTGCTCATTTTGAGGAGTCAATGAAGTATGCACGCAGGAGTGTTAGTGATGCTGATATACGCAAATACCAGGCATTTGCTCAGACCTTACAGCAATCCAGGGGGTTCGGAAGTGAATTTAGGTTTCCAGAGACTGGAAATAGGACTACTGGATCTGACCCCTTTGCAACTTCTGCTGCTGGGGCTGATGAGGATGATCTGTATAATTAG 2424 0.4451 MSHQGESSDTKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHPQTMEKLQLFRGDTILIKGKKRKDTICIALADDNLEEHKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPVEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDAALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQVRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIEQERRRRENPEAMDEDIMDEEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPETGNRTTGSDPFATSAAGADEDDLYN 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1579g00009 807 ProSitePatterns AAA-protein family signature. 622 640 IPR003960 GO:0005524|GO:0016887
Gabi1579g00009 807 FunFam Transitional endoplasmic reticulum ATPase 468 652 - -
Gabi1579g00009 807 Gene3D - 468 652 IPR027417 -
Gabi1579g00009 807 SMART AAA_5 241 377 IPR003593 GO:0016887
Gabi1579g00009 807 SMART AAA_5 514 654 IPR003593 GO:0016887
Gabi1579g00009 807 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Gabi1579g00009 807 Pfam ATPase family associated with various cellular activities (AAA) 518 652 IPR003959 GO:0005524|GO:0016887
Gabi1579g00009 807 FunFam Transitional endoplasmic reticulum ATPase 206 374 - -
Gabi1579g00009 807 MobiDBLite consensus disorder prediction 772 807 - -
Gabi1579g00009 807 NCBIfam CDC48 family AAA ATPase 31 769 IPR005938 GO:0016787
Gabi1579g00009 807 Gene3D - 656 765 - -
Gabi1579g00009 807 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Gabi1579g00009 807 Gene3D - 7 112 - -
Gabi1579g00009 807 Gene3D - 210 374 IPR027417 -
Gabi1579g00009 807 FunFam Cell division control 48 376 467 - -
Gabi1579g00009 807 Pfam Cell division protein 48 (CDC48), domain 2 132 193 IPR004201 -
Gabi1579g00009 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 766 IPR027417 -
Gabi1579g00009 807 Pfam AAA+ lid domain 397 439 IPR041569 -
Gabi1579g00009 807 Pfam AAA+ lid domain 674 715 IPR041569 -
Gabi1579g00009 807 CDD RecA-like_CDC48_r1-like 209 374 - -
Gabi1579g00009 807 SMART CDC48_N_2 30 113 IPR003338 -
Gabi1579g00009 807 SMART CDC48_2_2 130 196 IPR004201 -
Gabi1579g00009 807 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Gabi1579g00009 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Gabi1579g00009 807 SUPERFAMILY ADC-like 26 110 IPR009010 -
Gabi1579g00009 807 MobiDBLite consensus disorder prediction 772 794 - -
Gabi1579g00009 807 Gene3D - 376 467 - -
Gabi1579g00009 807 Gene3D - 113 209 - -
Gabi1579g00009 807 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Gabi1579g00009 807 PANTHER AAA-FAMILY ATPASE 402 771 - -
Gabi1579g00009 807 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Gabi1579g00009 807 CDD RecA-like_CDC48_r2-like 489 650 - -
Gabi1579g00009 807 FunFam Cell division control 48 113 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1579g00009 Gabi-Chr1579 129763 134752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1579g00009 447 711 Calmodulin-binding Proteins AT3G56690 48.302 2.49e-79 274