Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1579g00007 ATGGCTGAGATTGAAGGATCTCCAGGAAGCTCCATGCATGGAGTAACAGGCAAGGAACAAACCTTCATATCCTCAGTTGGTTCTCCAATGGTTCCAACTGATACCACAGCCAAATTTGCTCTGCCAGTTGATTCTGAACACAAGGCCAAGGTTTTTAAACTTTTCTCCATAGCCAAACCCCACATGAGAACCTTCCACCTATCTTGGATATCTTTTTTCACTTGCTTTGTCTCGACCTTCGCAGCAGCTCCTCTTGTCCCCATCATTCGTGACAACCTTAACCTCACAAAAAGTGATATTGGAAATGCTGGGGTTGCTTCTGTTTCTGGAAGTATTTTCTCTAGGCTTGCAATGGGTGCAGTTTGTGACCTATTAGGCCCACGTTATGGTTGTGCATTCCTTATTATGCTCACAGCCCCAACGGTGTTCTGCATGTCATTTGTGAAAGATGCTGCAGGGTATCTAGCAGTTCGGTTCATGATTGGTTTCTCCTTGGCCACTTTTGTTTCATGCCAATATTGGATGAGCACCATGTTTAACAGTAAGATTATAGGGCTTGTAAATGGAACTGCAGCAGGGTGGGGTAACATGGGTGGTGGAGCCACTCAGCTCATAATGCCATTGGTGTATGAACTGGTCCAAAGAGCTGGGGCTACTCCCTTCACTGCTTGGAGGATTGCCTTTTTCATTCCAGGTTGTTTGCATGTGATCATGGGGATCCTGGTCTTAACCCTAGGCCAGGACTTGCCAGATGGAAACCTCAGTGCCTTACAAAAGAAGGGTGATGTAGCTAAAGACAAGTTTTCCAAGGTGCTATGGTATGCCATAACAAATTACAGGACATGGATTTTTGCCCTTCTCTATGGGTACTCAATGGGAGTTGAATTAACCACTGACAATGTCATAGCTGAGTATTTTTTTGACAGGTTTAATCTCAAGCTGCACACTGCTGGAGTCATTGCTGCTTCATTTGGAATGGCAAACATCATTGCTCGACCCTTAGGTGGATATGCTTCTGATCTTGCAGCAAGGTTGTTTGGCATGAGAGGGAGACTCTGGACCCTCTGGATCCTCCAAACCTTAGGAGGGGTTTTCTGTATATGGCTTGGTCGTGCAAATTCTCTTCCTGTTGCTGTTTTGGCTATGATCCTCTTCTCTGTTGGAGCTCAAGCTGCATGTGGAGCAACATTTGGCATTATTCCTTTCATCTCAAGAAGGTCTTTGGGGATTATATCAGGTCTTACTGGTGCAGGTGGCAACTTTGGATCTGGCCTTACCCAATTGATTTTCTTTTCAACATCCAAATTCTCCACATCCACAGGTCTTTCCTTGATGGGTGTGATGATCGTGTGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCACAGTGGGGTGGCATGTTTCTACCCCCTTCAAAAGATGTCAACAAATCCACTGAAGAATTCTATTACACCTCTGAATGGGATGAAGAGGAGAAGCACAAGGGCTTGCACCAGAAAAGTCTCAAGTTTGCTGAGAACAGCCGTTCTGAAAGAGGAAGGCGTATAGCATCTGCCCCAACACCCCCAAATACAACTCCTCCTCATGTCTAA 1593 0.4545 MAEIEGSPGSSMHGVTGKEQTFISSVGSPMVPTDTTAKFALPVDSEHKAKVFKLFSIAKPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLAMGAVCDLLGPRYGCAFLIMLTAPTVFCMSFVKDAAGYLAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELVQRAGATPFTAWRIAFFIPGCLHVIMGILVLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFFDRFNLKLHTAGVIAASFGMANIIARPLGGYASDLAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPVAVLAMILFSVGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGGMFLPPSKDVNKSTEEFYYTSEWDEEEKHKGLHQKSLKFAENSRSERGRRIASAPTPPNTTPPHV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1579g00007 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 515 IPR044772 GO:0015112
Gabi1579g00007 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Gabi1579g00007 530 Gene3D MFS general substrate transporter like domains 264 465 IPR036259 -
Gabi1579g00007 530 Gene3D MFS general substrate transporter like domains 56 253 IPR036259 -
Gabi1579g00007 530 SUPERFAMILY MFS general substrate transporter 57 460 IPR036259 -
Gabi1579g00007 530 FunFam High affinity nitrate transporter 57 254 - -
Gabi1579g00007 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Gabi1579g00007 530 MobiDBLite consensus disorder prediction 490 513 - -
Gabi1579g00007 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Gabi1579g00007 530 MobiDBLite consensus disorder prediction 490 530 - -
Gabi1579g00007 530 FunFam Nitrate transporter 2.1 265 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1579g00007 Gabi-Chr1579 116176 118202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1579g00007 1 530 Inorganic Solute Cotransporters AT5G60770 80.000 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1579g00007 K02575 - gmx:547946 986.482