Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1579g00002 ATGTGCAAGACCAAAATGGCAATCAACGCCACAAACCCATCATCCTCAAGCCCTCGAACCCCTCGAACTTCACGCTCCCAAACCCCAAGGACAACAACATCAAGACCAACAAACATCCTTCAACCTTCAAGAACTTTCTCCGAACCTTCAACCTCGTACGCCAGCTCCACAGGCTCCACCGGCTACAGACTCTCCTCCGACACCTCCACTACAAGCAGAGCATCTCTCGCCACTCTCCGCGACAGCCTCCCAGAAAACCCAAACATTTACGACTTCTCCGAGATCTGCTCCGCCACCAACAACTTCCTCTCCAAGCGCCACTCCTCCTCAACCCCTTGCTGGCGATGCACCCTCCGCGGCGCTGACGTCATTGTTTTCCAGCGCAAGTTCCGCCGCAAACTCCAAACCTCCCAGCTCCGGGAGCTCCTCTCCGTCATCTGCCGCAGCCACCACGTCAGCATCATAAAGCTCCTCGGCGCGTCAATCTCCGGCGACCACATCTACCTTGTTTACGATTTCGTCAACGGAGCTAACCTCTCCGATTGTCTCCGAAACAAGAAGAACATTCACTTCACCGTTCTTTCCACTTGGATGTCGAGAATGCAGGTCGCCACCGATCTCGCTCACGCGCTCGATTACATTCACAACAAGACCGGTTTGAACATCAACTTCGTCCACAACCGCATCAAGAGCAGCGCCGTCATCGTCACCGACAATACCTTCAACGCTAGGGTTTGCCATTTCGGCGCCGCACAGCTTTGCGGCGAGATCGAGCTAGAAAACGAAACCGCCGCGAAAAAATTGGGGGAAATCACGGAGGAACAACCGTCGCCGACGAGATCCAAATCGGGGAGCTCCACCGTGCAATTCGAGGGCGTCCGAGGGTACATGTCGCCGGAATTTCAAGCCACCGGCGTTTTGACTCAGGAGTCCGATGTGTATGCTTTCGGGGTGGTGCTGCTGGAGCTGTTGTCAGGGGAGGAGCCACTGACGTTCAAGATTGATAAGACCACACGCGATTTCGTGAAGACGTCGGTGATTGCGACGGCGATGGCCGCCGTGGACGGCGGTGGTGGTAGCGTAGAAGGGAAGCTGAGGAATTGGGTGGATAGAAGGCTGAAGGACTCGTTCCCGATCGACGTTGCTGAGAAGCTGACACGTGTAGCGTTGGATTGCGTACACGTGGATCCTGATAAGAGGCCTAACATGGGACGCGTCGCTGGCAAGATCTCCACCCTTTATTTGAAGTCAAAGAAATGGTCTGAGAGTATTACGATGCCTGATCTTACCGTTTCCTTGGTTCCTCGTGCAGATTCTTACAAACCTCAAGAAAAGTCCATGATGGTGGAACCAGCGCAGGCAGCTACCAATAACACCGCAATTTTGAAGGAGTCCTCTCCAATAGAAATGCCAAGTGATGGTATCATTAATCTTTGA 1437 0.5365 MCKTKMAINATNPSSSSPRTPRTSRSQTPRTTTSRPTNILQPSRTFSEPSTSYASSTGSTGYRLSSDTSTTSRASLATLRDSLPENPNIYDFSEICSATNNFLSKRHSSSTPCWRCTLRGADVIVFQRKFRRKLQTSQLRELLSVICRSHHVSIIKLLGASISGDHIYLVYDFVNGANLSDCLRNKKNIHFTVLSTWMSRMQVATDLAHALDYIHNKTGLNINFVHNRIKSSAVIVTDNTFNARVCHFGAAQLCGEIELENETAAKKLGEITEEQPSPTRSKSGSSTVQFEGVRGYMSPEFQATGVLTQESDVYAFGVVLLELLSGEEPLTFKIDKTTRDFVKTSVIATAMAAVDGGGGSVEGKLRNWVDRRLKDSFPIDVAEKLTRVALDCVHVDPDKRPNMGRVAGKISTLYLKSKKWSESITMPDLTVSLVPRADSYKPQEKSMMVEPAQAATNNTAILKESSPIEMPSDGIINL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1579g00002 478 SUPERFAMILY Protein kinase-like (PK-like) 113 411 IPR011009 -
Gabi1579g00002 478 Gene3D Transferase(Phosphotransferase) domain 1 175 428 - -
Gabi1579g00002 478 Pfam Protein kinase domain 133 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1579g00002 478 Gene3D Phosphorylase Kinase; domain 1 63 173 - -
Gabi1579g00002 478 ProSiteProfiles Protein kinase domain profile. 81 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1579g00002 478 PANTHER OS09G0572100 PROTEIN 1 436 - -
Gabi1579g00002 478 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1579g00002 Gabi-Chr1579 31060 44008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1579g00002 85 424 Receptor kinase-like Gene Family AT1G51940 29.651 4.28e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi1579g00002 Pkinase 1.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1579g00002 - - vvo:131653853 624.009