Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1578g00001 ATGTGTGTGGCTGGTTATAGCATCTGTTTCAAGAGTTCAGTTTTGAAGTGTTTTGGTTCCTACATGGAAGCATACAAAGAGGAGGCACTTAAAGCAATAGAGATTGCTGAGAAGCGATTTGCTCAGAGGGACTTTGCAGGTGCAAAAAGTTATGCTTTGAAGGCTAAAAAGCTTTATCCCGGATTGGAGGGTATATCTCAAATGGTGACCACATTTGATGTTTACATTGCCTCCGAGGTCACCTGTAATGGTGAACCAGATTATTATTCTATTCTTGGCTTAAAACCTTCAGCAGATAAAGATGCTGTGAAGAAAAAGTACAAGAAGATGGCTGTGTTGCTTCACCCAGATAAGAACAAATGTGTGGGAGCTGATGGGGCATTTAATCTTGTGTCTGAGGCGTGGACGTGGCTGTCAGATAGTTCTTTGCGCAGTTCTTATGATCTCAAAAGAAATGCGCAATTGGCTGCAGGGATTAATCAGATGGATTTATCTTCAGTCCATGCAACAGGTTATAGTCAATGTTCCAATTTTTCAACCTCTGGAGATAAGCATGCCACTTTCTGGACAATTTGCACCTCTTGTAAGGTTCAGTATGAGTATCAGCGCAAGTATGCGAATAAAAAACTTTCTTGTAAGAATTGCCGTTGCACTTTCATTGCTGTTGAAACAGGAGCAGCCCCAGCAAATGGTTCATTCCCATATTGTCCTTGGTCATATGTGCCTGGCAATGGGTATGGAAGCCATTCATTTGATGGAGTGACATATGTTCCAACTAGTGCCGCCTATTTCACTGGCAATGGGGTCACAGGATACCATTCGGGACATGGATATGAGTATGTTCCAAATGTTTCATATCAGTGGAGCTCTGCTGGATTTGCCAATGAAAATGGATCAACCACCTTATCTGCTGATTCTGTTAGTCAGGCTAATGGGAATGCGAAAAGGGGAAGACCAAAAGTTAAATCAGGAGTTGATAGGAAGCATCACATGACCGAGACTGTGGTCAATATGAATTCAGATGTGTCATTCCCTGGTAATGAACCACAGGAAGTTAAGCCAAGTAAACCTGAGAAGAAAAGGAAAGTTGTGGGACCCAGTTTAAAAAATGGCCATGAAGAAAAGGGGTCAAAATGTGCTTCAGAATCAACATTGGCTAATGGAAATGAAAGTGTTGGACACGGCCAGAGGCTTAACTGCACAAGTGAAGTGCAAACCAAACAGTATTCCATGGCACCAGCTTTTGATGCAAGAAAATTATTGATTGAGAAGGCCAGGACAGAAATAAGGAAGAAACTGGAAGAGATGAAGTTGGCATCTGAAACTTCTGCTGCTGCTGCTGCTGCTGTTAATGAGAGAGAAAAATCAAAAGCTGAAGTTGGTCAAGTCAAAAGAGACACATGCAGAAAAACAGTTCTGAATGTTTCTGGTCATCAGTTAGAGCATAGGAAAACTGGTCCAGTCTCAATAACTGTGCCTGATCCCGACTTTCATGACTTCGATAAAGATAGGTCGGAAGAATGCTTCAGGCCAAAGCAAATATGGGCCTTATATGATGAGGATGATGGCATGCCTCGCTTGTATTGTCTGATCCGCGAGGTTATCTCTGTCAATCCATTTAAACTTCATATTAGTTACTTGAGTTCAAAAACTGATAGTGAGTTTGGCTCAGTGAACTGGCTTGATTCAGGCTTCACCAAATCTTGCGGAAATTTCAGGGCCTTGAACTCTGATGTTGTTGACCAAGTTAACATTTTTTCTCATGTTCTAATCCGGGCAAAGGCTGGTCGAGGTGGTTGTGTTCGCCTATACCCCAGAAGTGGAGATATTTGGGCCGTTTATAGAAATTGGTCAACAGATTGGAACAGATCTACACCGGATGAAGTGAGGCATCAATACGAAATGGTGGAGGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTTAGTCCCCTTATTAAGTTGGCTGGATTCAAAACTGTATACAAGAGGAATACAGACAGAAATGCCATTCGATGGATACCAAGAAGAGAAATGTTGTGCTTTTCACACCAAGTGCCTTCATGGTTGCTGAAAGGGGAGGCAGAAAATTTGCCTGAAAAGTGTTGGGATCTTGATCCAGCTGCAACCCCAGATGAGCTCCTTCATGCTGCTTCAGAAGTAAACATTTCTTAG 2178 0.4238 MCVAGYSICFKSSVLKCFGSYMEAYKEEALKAIEIAEKRFAQRDFAGAKSYALKAKKLYPGLEGISQMVTTFDVYIASEVTCNGEPDYYSILGLKPSADKDAVKKKYKKMAVLLHPDKNKCVGADGAFNLVSEAWTWLSDSSLRSSYDLKRNAQLAAGINQMDLSSVHATGYSQCSNFSTSGDKHATFWTICTSCKVQYEYQRKYANKKLSCKNCRCTFIAVETGAAPANGSFPYCPWSYVPGNGYGSHSFDGVTYVPTSAAYFTGNGVTGYHSGHGYEYVPNVSYQWSSAGFANENGSTTLSADSVSQANGNAKRGRPKVKSGVDRKHHMTETVVNMNSDVSFPGNEPQEVKPSKPEKKRKVVGPSLKNGHEEKGSKCASESTLANGNESVGHGQRLNCTSEVQTKQYSMAPAFDARKLLIEKARTEIRKKLEEMKLASETSAAAAAAVNEREKSKAEVGQVKRDTCRKTVLNVSGHQLEHRKTGPVSITVPDPDFHDFDKDRSEECFRPKQIWALYDEDDGMPRLYCLIREVISVNPFKLHISYLSSKTDSEFGSVNWLDSGFTKSCGNFRALNSDVVDQVNIFSHVLIRAKAGRGGCVRLYPRSGDIWAVYRNWSTDWNRSTPDEVRHQYEMVEVLDDYSEELGVCVSPLIKLAGFKTVYKRNTDRNAIRWIPRREMLCFSHQVPSWLLKGEAENLPEKCWDLDPAATPDELLHAASEVNIS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1578g00001 725 MobiDBLite consensus disorder prediction 352 379 - -
Gabi1578g00001 725 Pfam DnaJ domain 87 148 IPR001623 -
Gabi1578g00001 725 MobiDBLite consensus disorder prediction 380 394 - -
Gabi1578g00001 725 SMART dnaj_3 86 143 IPR001623 -
Gabi1578g00001 725 MobiDBLite consensus disorder prediction 303 326 - -
Gabi1578g00001 725 MobiDBLite consensus disorder prediction 339 394 - -
Gabi1578g00001 725 Coils Coil 422 442 - -
Gabi1578g00001 725 CDD DnaJ 87 140 IPR001623 -
Gabi1578g00001 725 Pfam Domain of unknown function (DUF3444) 489 695 IPR024593 -
Gabi1578g00001 725 PANTHER BNAC03G44070D PROTEIN 22 712 - -
Gabi1578g00001 725 Gene3D DnaJ domain 77 170 IPR036869 -
Gabi1578g00001 725 ProSiteProfiles dnaJ domain profile. 87 151 IPR001623 -
Gabi1578g00001 725 SUPERFAMILY Chaperone J-domain 80 152 IPR036869 -
Gabi1578g00001 725 PRINTS DnaJ domain signature 107 122 IPR001623 -
Gabi1578g00001 725 PRINTS DnaJ domain signature 89 107 IPR001623 -
Gabi1578g00001 725 PRINTS DnaJ domain signature 123 143 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1578g00001 Gabi-Chr1578 45150 48490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1578g00001 26 320 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.503 1.07e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1578g00001 - - gmx:100788692 1134.4