Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1575g00009 ATGCAGCGCCGCCGTGTCTCCGCCGTGTCGAATCTGACCCTCTTCTGCTTCTTGGCTTTGACACTCGTAATGTTGTCGGGCGCGGCGGAGGGACAACCTCAGCACCATCTCCCGGACCTACATTGGTATCCTGGAACCGCCACCTGGTACGGCGACCCCGAAGGGGACGGCAGCACCGGAGGGGCATGTGGGTATGGTAATTTGGTGGATGTGAAGCCGTTGAGGGCTCGGGTAGGTGCGGTGGGTCCGGTGCTGTTCATGAACGGTGAAGGGTGCGGTGCGTGCTATAAGGTGAAGTGTTTGGATAAAAGCATATGTTCTAGGCGAGCCGTGACGGTGATCATAACAGATGAATGTCCAGGGTGCCCTTCAGACCAAACCCACTTTGACCTGAGTGGTTCTGCATTTGGACGCATGGCTATAGCCGGAGAGAATGGTCCACTCAGGAACCGTGGTCAAATCCCAGTCATTTACCGAAGAACCCCATGTAAATATCCGGGAAGAAAAATTGCCTTCCATGTTAATGAAGGTTCCACACCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGATGCCGAGGGAGATATCGGCTCCATGCATATACGAGAAACAGGGTCTAGTGAGTGGCTGCAGATGAATCATGTGTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGGGGACCATTCTCTGTGAAACTGAGCTCCTCCTCTGGGAGGAGCCTCTCTGCAAGAGATGTTATTCCTAGCAATTGGGTTTCAAAGGCCACTTACACCTCTCGCCTAAATTTCTACCCTTAA 804 0.5249 MQRRRVSAVSNLTLFCFLALTLVMLSGAAEGQPQHHLPDLHWYPGTATWYGDPEGDGSTGGACGYGNLVDVKPLRARVGAVGPVLFMNGEGCGACYKVKCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGSAFGRMAIAGENGPLRNRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIRETGSSEWLQMNHVWGANWCIIGGPLRGPFSVKLSSSSGRSLSARDVIPSNWVSKATYTSRLNFYP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1575g00009 267 SUPERFAMILY Barwin-like endoglucanases 41 167 IPR036908 -
Gabi1575g00009 267 Gene3D - 29 163 IPR036908 -
Gabi1575g00009 267 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Gabi1575g00009 267 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Gabi1575g00009 267 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Gabi1575g00009 267 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Gabi1575g00009 267 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Gabi1575g00009 267 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Gabi1575g00009 267 FunFam Expansin B3 28 164 - -
Gabi1575g00009 267 Gene3D - 164 262 IPR036749 -
Gabi1575g00009 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Gabi1575g00009 267 Pfam Expansin C-terminal domain 170 250 IPR007117 -
Gabi1575g00009 267 FunFam Beta-expansin 3 165 266 - -
Gabi1575g00009 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Gabi1575g00009 267 PANTHER EXPANSIN-B3 19 265 - -
Gabi1575g00009 267 Pfam Lytic transglycolase 83 157 IPR009009 -
Gabi1575g00009 267 CDD DPBB_EXPB_N 42 163 - -
Gabi1575g00009 267 SUPERFAMILY PHL pollen allergen 168 261 IPR036749 -
Gabi1575g00009 267 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Gabi1575g00009 267 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Gabi1575g00009 267 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Gabi1575g00009 267 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Gabi1575g00009 267 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Gabi1575g00009 267 SMART dpbb_1 78 158 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1575g00009 Gabi-Chr1575 143166 146085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1575g00009 13 203 Expansin Gene Family AT4G28250 71.354 7.77e-98 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1575g00009 K20628 - gmx:100804525 488.804