Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1575g00003 ATGGCCTTAGATCAGTACTTGGAGGAGACTATGCCCCAAATTGATTCATTCGAAGATAAACAATCTTTGCAAAAGTGGAAATCTTCCAGTGATTCCATTGCAGATTCTGATAGAAATGCCTCTTGTGCCTTTGACTGCAACATATGCCTGGAGTGTGTGCAAGATCCTGTGGTCACTCTTTGTGGTCATCTCTACTGTTGGCCTTGCATTTACAAATGGCTTCATCACCAAAGTATCTCTTGGGAAACTGAAGTGCAGCAGAAGCCAAAATGTCCTGTATGCAAATCAGAAGTCTCTCAATCTTCCCTAGTTCCATTATATGGCCGTGGCCAAACCACAACACCACCTTCAAAAGGGAAAGTCCATCAAGTAGGGATTGTGATACCAAGAAGACCCCTGGGTCCCATTTCATATAATACAACTGTTTCCCAACCTATTTCACAAAGTTATCATCATGCCCATCATTCTTATCATCCTCAACAATTCAACTCAATACCAAGCAGTTACACCTCACCAATGCTTAGCACAAGTGGTTCACTAGATAACACATTTGGAATCTTTGGTGAGATGATATTTGCAAGGGTCTTTGGTAACCGGGTGGCAAACATATATACATATCCTAATTCGTATAATCTTTCAGGGAATAGTAACCCAAGGATCAGAAGGCATTTAATGCAAGTTGATAAATCACTCAGCAGGATCAGTTTTTTCCTCCTTTGCTGCCTAGTTTTGTGTCTCCTCTTATTCTGA 750 0.4107 MALDQYLEETMPQIDSFEDKQSLQKWKSSSDSIADSDRNASCAFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHHQSISWETEVQQKPKCPVCKSEVSQSSLVPLYGRGQTTTPPSKGKVHQVGIVIPRRPLGPISYNTTVSQPISQSYHHAHHSYHPQQFNSIPSSYTSPMLSTSGSLDNTFGIFGEMIFARVFGNRVANIYTYPNSYNLSGNSNPRIRRHLMQVDKSLSRISFFLLCCLVLCLLLF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1575g00003 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 109 IPR013083 -
Gabi1575g00003 249 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Gabi1575g00003 249 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Gabi1575g00003 249 SMART ring_2 46 94 IPR001841 -
Gabi1575g00003 249 SUPERFAMILY RING/U-box 45 101 - -
Gabi1575g00003 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi1575g00003 249 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1575g00003 Gabi-Chr1575 41489 45029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1575g00003 44 249 C3H Transcription Factor Family AT4G28270 38.863 2.32e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1575g00003 K10666 - gmx:100785491 349.362