Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1575g00002 ATGCGGTGGCAGAGGGTTGTAACTTATGTGCCAGGCAAGACCCCGGATCAGATAAAGGAACACTTTCATGCATTGCTCCACCACTTGTACCGAGTTGAACCGGGTCGGTTTGAGTTGCCCAGTTACTCATATGACTCCGCGACGGTCATGGTAGAAGCAAATGATAGTTTGCCTGAGAAGACTACTCCGGTTCAGAAGAAGAAAATGTGGACTTGGACTGAAAAAGAACATAGGTTATTTCTGATTGGGCTAGAGAAAGATGGCAAGGGAGATTGGAAAAGCATTTCAAGGAATGTTGTTAAATCAAAAACTGCAACTCAAATTGCTAGCCATGCCCAAAAGTATTTCATTCGTCAAGGTTTCCCAAAAGAGCAGAGAAAAAGAACAAGCATCCATGACATAACCATAATAAAAGACATTGCCTTGGGTGATCAGCTTCATTCTCCAAATGTTCCAATGCAGGAGCCACAAGCACAACAAATTCTGCAAAGTTGTTTTCATCCAGCTCCTAATATTCCAGTGCAGCAAATTCATACAACAGAAATTATGAAGAATATGGTTCATGCTCCTAGTGCTCCAATGCAGCAGTTAAAGGAGCAGCAACAAGACCAAGAAACTATGCAAAATTGGGTTTATCCTCCTTATATTCCAAGGCATCAATTACATGCAATGCAACAAGCACCAGAAATTCTAAAGAATTTAGTTTATGCTCCTAATATTCCACTGCAGCAGCTACAAGAGCCGCAGAGTTGGGTTCTCAATGTTCCAACGCAGCAAAACCAATAA 786 0.4173 MRWQRVVTYVPGKTPDQIKEHFHALLHHLYRVEPGRFELPSYSYDSATVMVEANDSLPEKTTPVQKKKMWTWTEKEHRLFLIGLEKDGKGDWKSISRNVVKSKTATQIASHAQKYFIRQGFPKEQRKRTSIHDITIIKDIALGDQLHSPNVPMQEPQAQQILQSCFHPAPNIPVQQIHTTEIMKNMVHAPSAPMQQLKEQQQDQETMQNWVYPPYIPRHQLHAMQQAPEILKNLVYAPNIPLQQLQEPQSWVLNVPTQQNQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1575g00002 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 120 IPR017930 -
Gabi1575g00002 261 PANTHER TRANSCRIPTION FACTOR KUA1 2 217 - -
Gabi1575g00002 261 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 119 IPR006447 GO:0003677
Gabi1575g00002 261 Gene3D - 1 39 - -
Gabi1575g00002 261 CDD SANT 71 116 IPR001005 -
Gabi1575g00002 261 ProSiteProfiles SANT domain profile. 72 120 IPR017884 -
Gabi1575g00002 261 Gene3D - 70 120 - -
Gabi1575g00002 261 Pfam Myb-like DNA-binding domain 72 116 IPR001005 -
Gabi1575g00002 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 30 IPR017930 -
Gabi1575g00002 261 SMART sant 68 118 IPR001005 -
Gabi1575g00002 261 SUPERFAMILY Homeodomain-like 65 119 IPR009057 -
Gabi1575g00002 261 FunFam transcription factor MYB1R1 70 120 - -
Gabi1575g00002 261 ProSiteProfiles Myb-like domain profile. 72 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1575g00002 Gabi-Chr1575 8729 12590 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1575g00002 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1575g00002 - - pper:18779579 161.384