Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1572g00003 ATGAGGTATTTAAATGTCCAGTCTCCTACCAACTCTAAGCAAGAGAAGTTCTCACTGCTCTCTACCCTGCCCTCTGAAATGGAGAACAGAAGGTCCTCAGATCATGTTGTTCTCTTCATTGACCAACACAACACTGAAAATAGCCAGAGTTCTGAACCTTATGAGAAGCCCAAACACCCTTTAAGAGTCAAAACTCTTAAACGTCTCAGCTTCTCCAAACCCAAATCCCGAATCCTAGAATATAACTATCCACCCCGCAACAAACTAACAACCTCTGAAGATAGTGACATTCAACCTTCATATAAGATCTCTTCCGTGGTCGAAGATGACGATAACGACGACGACGACGATGATGACAAGTGGGAATTCGATGAAGAAGAAGAGCTTGAGGAGGATGGTGAAGAGCATAATCTAAAGTTACAGAAAAAGAGAAAGTTTAAGGTGAAGTGGAGGCATGTTGTGGAGTGGGTTTTGTTTCTCAACATATTAACTTGCTTGGTGTGTTCTCTATCAATAACTTCCATAAAAAATATTCATGTGTGGGGTTTGGAGATTTGGAAGTGGTGTTTGATGGCAATGGTAACATTCAGTGGCCGTCTGGTTTCAGGGTGGTTAGTTGGTGTAACTGTTTTCTTTTTAGAGAGAAACTTCATGCTGAGAGAAAAGGTTTTATACTTCATTTATGGACTCAGGAAGAGCATAAGAAACTGTTTATGGTTAAGCCTCGTTTTGCTCTCTTATTGGAGTGTGGTATTCGATGATGTCCAGAAGAAAAACCACAAGTTCCTCAATAAGGTGTTTCAAGCATTAGTTGCTTTCTTAGTTGGTGCTATCATTTGGCTAGTGAAGATTGTTTTGGTGAAAATGCTTGCCTCTTCGTTTCATGTAACAACATACTTTGATAGAATGAAAGAGAGCGTTTTTCATCACTATATATTGGACACATTGTCAAGTCCACCAATGGAAGATGCTGAAGAGATATTGAAGCAGCATAATCTAAAAGGATCAAAGTCCATGCCAGCTAGATGGAAGGATGCAAGGAATTTTTACAAGTCAAAGAGATTTGGGTCAAGGAAGATTGATATGGAGAAGCTGAGAGAACTTAGCATGGAAAGCACAGCATCTATATGGAGTGTGAAAAAGCTTGTTAACTATGTTATGTGCTCAGGTTTGTCCACTATTTCAAGGACTGTCGATGATTTTGGTAACGCTGAGTCTGAGATTAGTAGTGAGTGGGAAGCTAGAAATTGTGCCCAAAGGATATTCAAGAACGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGGGTTGAGATACATACCATATTCCCACTCTTTGAAGGTGCTCTTGAAACTGGAAAGATCGGCAGATCTTCATTTAGAAATTGGGTGATTCGAGCCTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAAATAGCAAGCGCAGTTGTAAGTGTGATAATAATAATTGTGATGCTTTTGCTGATGGGGGTGGCTACGCTCAAGATAATATTATTCTGTATTACACAAATAGTCTTAATAGGGGTGGCCTTCCAAGGTACTTGCAAAACAGTCTTGGAAGCCATAATCTTTGTCTTCGTCATGCACCCTTTTGATATTGGAGACCGTTGCGTCATTGATGGTGTTCAGATGATAGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAAAAAATATACTACCCTAACGCGGTTTTGCTCTCTAAGCCAATAAGTAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTAATTTCACTATTGATATCTCAACTCCCATGGAGACTATCGTCGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACACTGTGATAGCGAAAGAAATAGATAATGTGGACAAGTTGAAGCTGTGCTTAAGTGTGCAACACACCATCAACCATCAGAACTACAGTGAGCGAAACTTTAGGATAACGGAGCTGCTCTTGGAATTGAAAAAGATCTTTGAGATTCATGGTGTCAAGTATCATCTACTTCCTCAGGAGATCCACCTTACCAAGATGAACATTGAAAATGGGAGAGTTCTGTTTCAATCATGA 2184 0.397 MRYLNVQSPTNSKQEKFSLLSTLPSEMENRRSSDHVVLFIDQHNTENSQSSEPYEKPKHPLRVKTLKRLSFSKPKSRILEYNYPPRNKLTTSEDSDIQPSYKISSVVEDDDNDDDDDDDKWEFDEEEELEEDGEEHNLKLQKKRKFKVKWRHVVEWVLFLNILTCLVCSLSITSIKNIHVWGLEIWKWCLMAMVTFSGRLVSGWLVGVTVFFLERNFMLREKVLYFIYGLRKSIRNCLWLSLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAFLVGAIIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSSPPMEDAEEILKQHNLKGSKSMPARWKDARNFYKSKRFGSRKIDMEKLRELSMESTASIWSVKKLVNYVMCSGLSTISRTVDDFGNAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKIGRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAVVSVIIIIVMLLLMGVATLKIILFCITQIVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMWDSINFTIDISTPMETIVALKKSIQMYIESKPKYWNPKHTVIAKEIDNVDKLKLCLSVQHTINHQNYSERNFRITELLLELKKIFEIHGVKYHLLPQEIHLTKMNIENGRVLFQS 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1572g00003 727 PIRSF Memb_At2g17000 2 726 IPR016688 -
Gabi1572g00003 727 Gene3D - 557 606 IPR023408 -
Gabi1572g00003 727 Pfam Mechanosensitive ion channel 498 703 IPR006685 GO:0016020|GO:0055085
Gabi1572g00003 727 SUPERFAMILY Sm-like ribonucleoproteins 548 606 IPR010920 -
Gabi1572g00003 727 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 43 717 IPR016688 -
Gabi1572g00003 727 MobiDBLite consensus disorder prediction 82 119 - -
Gabi1572g00003 727 FunFam Predicted mechanosensitive ion channel 557 606 - -
Gabi1572g00003 727 MobiDBLite consensus disorder prediction 85 102 - -
Gabi1572g00003 727 MobiDBLite consensus disorder prediction 40 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1572g00003 Gabi-Chr1572 88798 98562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1572g00003 7 717 Mechanosensitive Ion Channel Family AT5G12080 41.486 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1572g00003 K22048 - gmx:100813521 1101.27