Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1572g00001 ATGTTTACTTGCATAGCGTGTACGAAGCAAACAGAGGACGAGAGGGACGAAGATGAACGAGCCCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATAAAGGATATGGCACTGAAGTTTTCAGGTGCTTACAAGCAATGCAAACCCTGCACAGGGTCCAGTAGCTACAAGAAAGGACATAGACCATATCCAGATTTTGATACCATCTCAGAAGGGGTTCCCTACCCTTATATTGGAGGTGCAAGCTCAAGTTCAACCCCTGCATGGGACTTCACAACCTCTAACTACCCTGGTGGTAGATCTGACCCAAGATTCACTGGTGACCGCACCCCTAGAGGACGTGACTCAGCATCAGTCTGTGATGTAGTGTTAGAGGATGAGGATGAGCCTAAGGAGTGGATGGCACAGGTAGAGCCAGGGGTTCACATTACCTTCGTGTCTCTTCCTAATGGGGGAAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATGTTCAATAAATGGCAAGCTCAACGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTATAACGTCCAGAGATTTAATCGACAAGCTCTTAACACTCCTTCAAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGATTGACATCTGCACAAGAAAGCCCCATGGCCTCAAACAAGGATTGGACACCGAGGAGTCACTATAAACCTTCTGTGAACAGAGGATACAACCCATCTGAAACGTTGGATCATGGTGGTGGCCACAACTTCCATGCAGGGCCGTCCATGGAACCATCAAGGGCAACCACCTCTTCTAGAGATGAGCCTTCTATTAGCAATGCAAGTGAAATGGAAACAGAATGGGTAGAGCAAGATGAGCCTGGAGTTTACATTACAATCAGGCAGTTAGCTGATGGGACCAGGGAGCTTCGACGTGTCAGATTCAGCCGGGAAAGATTTGGGGAGGTAAATGCAAAAACTTGGTGGGAAGAGAACAGAGAGAGAATACAAGCTCAATACCTTTGA 1041 0.4726 MFTCIACTKQTEDERDEDERARESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSNYPGGRSDPRFTGDRTPRGRDSASVCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRLTSAQESPMASNKDWTPRSHYKPSVNRGYNPSETLDHGGGHNFHAGPSMEPSRATTSSRDEPSISNASEMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1572g00001 346 ProSiteProfiles BRX domain profile. 138 193 IPR013591 -
Gabi1572g00001 346 Pfam Transcription factor regulating root and shoot growth via Pin3 138 192 IPR013591 -
Gabi1572g00001 346 Pfam Transcription factor regulating root and shoot growth via Pin3 290 345 IPR013591 -
Gabi1572g00001 346 MobiDBLite consensus disorder prediction 217 250 - -
Gabi1572g00001 346 Pfam Transcription factor BRX N-terminal domain 23 57 IPR027988 -
Gabi1572g00001 346 ProSiteProfiles BRX domain profile. 291 346 IPR013591 -
Gabi1572g00001 346 MobiDBLite consensus disorder prediction 12 33 - -
Gabi1572g00001 346 MobiDBLite consensus disorder prediction 202 295 - -
Gabi1572g00001 346 MobiDBLite consensus disorder prediction 101 123 - -
Gabi1572g00001 346 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 346 IPR044532 -
Gabi1572g00001 346 MobiDBLite consensus disorder prediction 268 290 - -
Gabi1572g00001 346 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1572g00001 Gabi-Chr1572 27160 33694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1572g00001 1 346 Major Intrinsic Protein MIP AT1G31880 68.466 4.56e-166 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1572g00001 - - ccaj:109789470 649.047