Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi156g00014 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGTCGGTGGCGGCGAGGTCTCGCCGGCTGACTGCCGATTACCTGTGGCCGGAATTGAAGAAGCAGAGCTCAGGGAAGCACTTCTCTAAGCCCTTAAGGCCTGAGGTGATTGACTTGGACGATGATTTCGAGGCTGATTTCAGGGAATTCAAGGACGATTCCGATGATGATGATGATGATGTTGTCGAGCCTTTTGATTTCACCGCCTCTCGTGCTGTGAAATCTGTGCCATTCAAAGGGCCAGCTGAGAAGTCTGCAAAGAGAAAGAGGAAGAATCAGTATAGAGGAATCCGTCAGCGTCCTTGGGGAAAATGGGCAGCTGAGATCCGTGATCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAGCACTGCTGAAGAAGCCGCAAGAGCTTATGATGCTGAAGCACGCAGGATTCGTGGCAAGAAAGCCAAGGTCAATTTCCCTGAGGATGCTCCATGTGCTTCCCCAAAACATTCTAAGGCAAATCCGCAGGAAAATCTTAATACTTTTCAGCCCAATCCCAATCCCAATCCCAGCATCAAGTTCAATGTTGGTAACAATCATGATAACTACTACTGTCCGATGGATCTGGTGGAACAGAAACCCCTGGTTGACCAGTTTGCTAACATGGGCTCCTTCCCTGGCAGTGGAAATGAAATCACATCTCTTGCTTCGTCTGATGATGTGACCTTCTACTTTGGTTCAGATCAGGGGAGTAATTCATTTGATTATTCAGAACTTGGGTGGGGTGAACAGGGCCCAAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGAAGGAGAATCTCATTTTGTGCAAGATGACAACCAGCAGAAAAACATGCAGTCTAACTCTCAAGATGTGATATCTGTGCAAGATAATTCTGCTAAGACACTGTCTGAGGAGCTTGCTGATATTGAATCCGAGTTGAATTTCTTTCAGATGCCTTATCTTGAAGGGAACTGGGACGATACATCATTGGAATCATTGCTATCAGTAGACATAACTCAGGATGGCGGAAACCTGATGAACCTTTGGAGCTTTGAAGACATTCCTTCCATGGCTGGCGGAGTATTCTGA 1128 0.4716 MCGGAIISDFIPASVAARSRRLTADYLWPELKKQSSGKHFSKPLRPEVIDLDDDFEADFREFKDDSDDDDDDVVEPFDFTASRAVKSVPFKGPAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPEDAPCASPKHSKANPQENLNTFQPNPNPNPSIKFNVGNNHDNYYCPMDLVEQKPLVDQFANMGSFPGSGNEITSLASSDDVTFYFGSDQGSNSFDYSELGWGEQGPKTPEISSMLSAPLEGESHFVQDDNQQKNMQSNSQDVISVQDNSAKTLSEELADIESELNFFQMPYLEGNWDDTSLESLLSVDITQDGGNLMNLWSFEDIPSMAGGVF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi156g00014 375 PANTHER DNA-BINDING DOMAIN 83 317 IPR044808 GO:0003700|GO:0009873
Gabi156g00014 375 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Gabi156g00014 375 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Gabi156g00014 375 SUPERFAMILY DNA-binding domain 105 163 IPR016177 GO:0003677
Gabi156g00014 375 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Gabi156g00014 375 MobiDBLite consensus disorder prediction 173 191 - -
Gabi156g00014 375 CDD AP2 105 164 IPR001471 GO:0003700|GO:0006355
Gabi156g00014 375 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Gabi156g00014 375 MobiDBLite consensus disorder prediction 161 191 - -
Gabi156g00014 375 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Gabi156g00014 375 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Gabi156g00014 375 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Gabi156g00014 375 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi156g00014 Gabi-Chr156 123662 126835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi156g00014 1 375 AP2-EREBP Transcription Factor Family AT1G53910 45.297 1.20e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi156g00014 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi156g00014 K09286 - gmx:100170723 481.485