Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi156g00007 ATGAACAAGATCAAATCAGCCTTCGCCAGAATATCTGATTCCTTGTCCAAGAACAACAACAAGAAGCTCTTCTTCGCTCTCTTGGCTACTTTACTTCTTGTAACCGTCATTGTCGCTGTAGCAAGCTCCCGCAAGAGCCACGACGACAATGACGAGTCCTCCACATCCCATGCCATCATCAAAAGTGCTTGCAGCAGCACATTGTACCCAGAATTGTGCTTCTCAACCGTGGCCTCTGAACCTGGCCATGCCCAGAAAGTATCCAGTCACATAAATGTGATAGAGATGTCCCTGAACATAACCACCAGATATGTTCAGAGCAATTACTTCACCGTCGAGAAGCTGTTAACCCGAAAGGGTCTCACCAAGAGGGAGAAAACCGCACTCCACGATTGTTTGGAAACCATTGATGAGACGCTGGACGAGCTTGACAAGGCCAAGGAGAGCCTCAAAGAATACCCATCTCATAACAAGTCTCTGTCTCAGCAAGCTGATGATCTTAAGACTCTGATAAGTTCCGCCATAACCAACCAAGTTACTTGCTTGGATGGTTTCTCTCATGATGTGGCCGACAGAAGCCTCAGGAAATATCTGGAAGCAGGGGAAGTCCATGTGGAGCACATGTGCAGCAACGCATTGGCTATGACCAAGAACCTCACTGATACTGACATTGCTAATTATGAGAAGAAGATGTTGGGAAGGAACAGCAGGAAACTCATGGAGGAGGATGGGATGATCGAGTGGCCGGAGTGGATTTCTGCATCCGACAGGCGGCTTCTGCAGGCGGGTACGGTGAATCCTGACGTTGTGGTGGCGGCAGACGGCAGCGGGAACTTCAGGACAGTGTCAGCTGCGGTGGCTGCAGCTCCTGAGCAGAGTAGCAAAAGATATGTCATTAAGATCAAAGCAGGAGTATACAAAGAGAATGTGGATGTGCCAAAGAAGAAGACCAACATCATGTTCGTGGGAGATGGTAGAAGCAACACTATCATCACAGCAAATAGAAATGTTGTTGATGGCAGCACAACCTTCAACTCTGCCACGGTGGCCGTAGTGGGTGAACGATTCTTGGCCCGAGACATAACCTTCCAGAACACAGCAGGTCCCTCAAAGCACCAAGCCGTGGCCCTTCGAGTTGGTGGTGACCTATCAGCGTTCTACTTGTGCGACTTCCTTGCATACCAAGACACCCTTTACGTCCACTCCAATCGCCAATTCTTTGTGAACTGCTACATAGCTGGCACTGTGGACTTCATCTTTGGCAACTCGGCTGCTGTATTCCAAAACTGTGACATCCACGCTAGGCGTCCCAATTCAGGACAAAAGAACATGGTCACAGCACAAGGCCGAGTTGACCCTAACCAAAACACTGGCATTGTCATCCAAAAATGTAGGATTGGCGCCACTAAGGATTTAGAACCCGTCAAGGGCAGCTTCCCTACGTTTCTTGGGAGGCCATGGAAGGAGTACTCTAGGACTGTCATCATGCAATCAACCATAAGTGATGTCATTGACCCTGCTGGCTGGCATGAGTGGGATGCGAATTTTGCATTGAATACCTTGTTTTATGGTGAGTATCAGAACACAGGGGTTGGTGCTGCCACCTCTGGGAGGGTTAAGTGGAAAGGGTTTAAGGTCATTACCAGTTCTTCTGAGGCCCAGTCTTTTACTCCTGCCAATTTCATTGCAGGTTCTGGCTGGTTGGGCTCTACTGGTTTCCCATTCTCTCTTGGCCTGTAG 1740 0.4897 MNKIKSAFARISDSLSKNNNKKLFFALLATLLLVTVIVAVASSRKSHDDNDESSTSHAIIKSACSSTLYPELCFSTVASEPGHAQKVSSHINVIEMSLNITTRYVQSNYFTVEKLLTRKGLTKREKTALHDCLETIDETLDELDKAKESLKEYPSHNKSLSQQADDLKTLISSAITNQVTCLDGFSHDVADRSLRKYLEAGEVHVEHMCSNALAMTKNLTDTDIANYEKKMLGRNSRKLMEEDGMIEWPEWISASDRRLLQAGTVNPDVVVAADGSGNFRTVSAAVAAAPEQSSKRYVIKIKAGVYKENVDVPKKKTNIMFVGDGRSNTIITANRNVVDGSTTFNSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGGDLSAFYLCDFLAYQDTLYVHSNRQFFVNCYIAGTVDFIFGNSAAVFQNCDIHARRPNSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEPVKGSFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWHEWDANFALNTLFYGEYQNTGVGAATSGRVKWKGFKVITSSSEAQSFTPANFIAGSGWLGSTGFPFSLGL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi156g00007 579 SMART PMEI_2 55 215 IPR006501 GO:0004857
Gabi156g00007 579 FunFam Pectinesterase 262 579 - -
Gabi156g00007 579 SUPERFAMILY Pectin lyase-like 265 578 IPR011050 -
Gabi156g00007 579 Pfam Plant invertase/pectin methylesterase inhibitor 59 215 IPR006501 GO:0004857
Gabi156g00007 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 221 IPR035513 -
Gabi156g00007 579 Gene3D - 262 579 IPR012334 -
Gabi156g00007 579 FunFam Pectinesterase 56 220 - -
Gabi156g00007 579 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Gabi156g00007 579 NCBIfam pectinesterase inhibitor domain 27 220 IPR006501 GO:0004857
Gabi156g00007 579 CDD PMEI-like_3 62 220 - -
Gabi156g00007 579 Coils Coil 129 153 - -
Gabi156g00007 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 220 IPR035513 -
Gabi156g00007 579 PANTHER PECTINESTERASE 33 569 - -
Gabi156g00007 579 Pfam Pectinesterase 268 564 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi156g00007 Gabi-Chr156 56571 61487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi156g00007 1 579 Carbohydrate Esterase AT1G53830 68.074 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi156g00007 K01051 - qsa:O6P43_018475 827.394