Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi156g00004 ATGAGTGACTCGTCGGTGCCAAGTGACAACTTGGGCGAGTCCCCAGCCGTTGATATAACCGGCAAGATTATGGTTGTGGTTATAATAATCTTATTCATGGTTGTTGTAATTTCTATGTTCTTTCATCTCTATGCTAAAAGGTTCTGGTGGAGTATTGGAGAGACCACTGCTTTCGGATCTCGGAGTCGGAGCCGCAACGGCCGCCGTTTTGTCTTTGCCTCTGGTCAAGACGGTGCTTTTCGAACCGGGCTTGATCCTTCTGTCCTCAGGTCCCTTCCCGTATTGTTATTCCAATCCCAAGACTTCAAGGATGGTTTAGAATGTGCAGTTTGCCTCTCTGAGCTTGTTCAAGGAGAAAAGGCTAGACTTTTACCCGAATGCAATCATGGGTTTCACGCAGATTGCATTGATATGTGGTTCCAATCCCATTCTACCTGCCCTCTTTGCAGGAAACCAGTTGCCTCTGAATCAGTTATTGGTTCAAATGATGAACAAAATGTCTCACGGAATAATGGATCAACAGATGCAGAAAATTCAGCTTACGTTAGTGGCTTAGAATCTTCAACTTTTCCCACAAATGTGTTGATTTGGGGGAACCAGACCCAAATAAGTTCTACTGTTGCTTCTTTGGAAGAAAGTACCTCTCGGCCACCTTGCTCCTCATCCTCCTCAGGGGATAGTAGCAGTAATAATAAACGTCATGGAATGTTGGTGATTGATATACCAACGGACATCACTTCATCCTCTTTGTCGCCCTCTTCAAGCAGGTTTGCTGAAGATGACCTGAAATCGCCTATGACAGGGAGACTGAGGGCATTGAAGAGGCTTTTAAGCAGGGACAACAAGTTAAATCCATGGAGTCCCAATTCTATAGATGTGGAACAAGCTGGGGGAGGACAGAGTTAG 906 0.4525 MSDSSVPSDNLGESPAVDITGKIMVVVIIILFMVVVISMFFHLYAKRFWWSIGETTAFGSRSRSRNGRRFVFASGQDGAFRTGLDPSVLRSLPVLLFQSQDFKDGLECAVCLSELVQGEKARLLPECNHGFHADCIDMWFQSHSTCPLCRKPVASESVIGSNDEQNVSRNNGSTDAENSAYVSGLESSTFPTNVLIWGNQTQISSTVASLEESTSRPPCSSSSSGDSSSNNKRHGMLVIDIPTDITSSSLSPSSSRFAEDDLKSPMTGRLRALKRLLSRDNKLNPWSPNSIDVEQAGGGQS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi156g00004 301 MobiDBLite consensus disorder prediction 160 180 - -
Gabi156g00004 301 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gabi156g00004 301 MobiDBLite consensus disorder prediction 207 234 - -
Gabi156g00004 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 238 - -
Gabi156g00004 301 MobiDBLite consensus disorder prediction 282 301 - -
Gabi156g00004 301 FunFam RING-H2 finger protein ATL3 76 155 - -
Gabi156g00004 301 SMART ring_2 108 149 IPR001841 -
Gabi156g00004 301 Pfam Ring finger domain 107 150 IPR001841 -
Gabi156g00004 301 MobiDBLite consensus disorder prediction 242 260 - -
Gabi156g00004 301 CDD RING-H2_EL5-like 107 150 - -
Gabi156g00004 301 MobiDBLite consensus disorder prediction 207 265 - -
Gabi156g00004 301 MobiDBLite consensus disorder prediction 278 301 - -
Gabi156g00004 301 SUPERFAMILY RING/U-box 88 155 - -
Gabi156g00004 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 158 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi156g00004 Gabi-Chr156 27262 28167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi156g00004 18 284 C3H Transcription Factor Family AT1G53820 41.297 1.98e-61 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi156g00004 - - gmx:100775523 322.783