Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1568g00010 ATGTTTGGAAGGGCACCGAAGAAGAGCGACAGCAGCAGGTACTATGAAATCCTCGGAATCTCCAATAACGCTTCTCAGGAAGATGTGAAGAAGGCTTACAAGAAACTCGCCATTAAGGCTCATCCCGACAAGGGTGGTGATCCCGAGAAGTTCAAAGAGATTGGAGAAGCTTATCAGGTTCTGGCGGACCCTGAAAAGCGTGAGATATATGATCAATATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGTGGGGGTGGTGGCCCTGACCCATTTGATATATTCCAGTCTTTCTTTGGTGGGAGTCCATTTTCATCAGGTGGTAGTAGTAGAGGACGAAGGCAGAGACGTGGAGAAGATGTTGTTCACCCTCTCAAGGTCTCTTTGGACGATCTTTACCTTGGGACATCCAAGAAGCTCTCCCTCTCTAGAAATGTTATATGCTCAAAGTGCAGTGGCAAAGGTTCTAAGTCTGGAGTTGCCCCGAGCTGTGTTGCTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACAGATTGGTCCCGGTATGATTCAGCAAATGCAGCATCCTTGCAATGAGTGTAAAGGTACTGGAGAAACTATCAGTGACAGAGACCGCTGCCCGCTGTGCAAGGGAGAGAAAGTTGTCCAAGAGAAGAAAGTACTTGAAGTTGTTGTTGAGAAGGGAATGCAGAATGGGCAGAAAATTACATTCCCTGGTGAAGCTGATGAAGCGCCAGACACAATTACTGGGGATATTGTTTTTGTGCTTCAGCAGAAGGAACATCCCAAGTTTAGAAGAAAGGGTGAAGATCTTTTTGTAGAGCATAATTTGTCCCTTACTGAGGCTTTATGTGGCTTCCAATTTGTGCTGACCCACTTTGATGGCCGGCAGCTCCTTATCAAATCAAACCCTGGGGAAGTTGTCAAGCCTGATTCATACAAGGCTATTAATGATGAGGGAATGCCGATGTACCAGAGGCCATTCATGAAGGGGAAGCTTTACATTCACTTTACTGTGGAATTCCCTGATTCTCTAAATCCTGATCAGGTCAAGGCTTTTGAGGCTGTTCTGCCAGCAAAGCTTTCATCACAGTTGACAGAAATGGAGCTGGACGAATGTGAGGAAACTACACTTCATGATGTCAATATGGAGGAAGAGTCAAGGAGGAAGAAGCAGCAAGCTCAGCAGGAGGCATATGAGGATGATGATGACGATGATGATATGCCTGGTGGTGCACAAAGGGTACAGTGCGCCCAGCAGTAG 1266 0.4629 MFGRAPKKSDSSRYYEILGISNNASQEDVKKAYKKLAIKAHPDKGGDPEKFKEIGEAYQVLADPEKREIYDQYGEDALKEGMGGGGGGPDPFDIFQSFFGGSPFSSGGSSRGRRQRRGEDVVHPLKVSLDDLYLGTSKKLSLSRNVICSKCSGKGSKSGVAPSCVACQGTGMKVSIRQIGPGMIQQMQHPCNECKGTGETISDRDRCPLCKGEKVVQEKKVLEVVVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKGEDLFVEHNLSLTEALCGFQFVLTHFDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPDQVKAFEAVLPAKLSSQLTEMELDECEETTLHDVNMEEESRRKKQQAQQEAYEDDDDDDDMPGGAQRVQCAQQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1568g00010 421 CDD DnaJ 14 63 IPR001623 -
Gabi1568g00010 421 Pfam DnaJ domain 14 71 IPR001623 -
Gabi1568g00010 421 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Gabi1568g00010 421 FunFam DnaJ subfamily A member 2 148 214 - -
Gabi1568g00010 421 Coils Coil 383 403 - -
Gabi1568g00010 421 Gene3D DnaJ domain 10 109 IPR036869 -
Gabi1568g00010 421 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Gabi1568g00010 421 FunFam Chaperone protein dnaJ 3 215 255 - -
Gabi1568g00010 421 MobiDBLite consensus disorder prediction 378 398 - -
Gabi1568g00010 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Gabi1568g00010 421 FunFam DnaJ subfamily A member 2 262 344 - -
Gabi1568g00010 421 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gabi1568g00010 421 Gene3D - 110 260 - -
Gabi1568g00010 421 SUPERFAMILY Chaperone J-domain 9 107 IPR036869 -
Gabi1568g00010 421 Gene3D - 262 344 - -
Gabi1568g00010 421 FunFam Chaperone protein DNAj, putative 10 112 - -
Gabi1568g00010 421 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gabi1568g00010 421 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gabi1568g00010 421 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gabi1568g00010 421 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Gabi1568g00010 421 MobiDBLite consensus disorder prediction 378 421 - -
Gabi1568g00010 421 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Gabi1568g00010 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 353 IPR008971 GO:0006457|GO:0051082
Gabi1568g00010 421 Gene3D - 148 214 - -
Gabi1568g00010 421 SMART dnaj_3 12 66 IPR001623 -
Gabi1568g00010 421 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 399 IPR044713 GO:0006457|GO:0030544
Gabi1568g00010 421 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Gabi1568g00010 421 CDD DnaJ_C 119 346 - -
Gabi1568g00010 421 Hamap Chaperone protein DnaJ [dnaJ]. 10 382 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gabi1568g00010 421 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1568g00010 Gabi-Chr1568 191496 193893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1568g00010 14 73 C2H2 Transcription Factor Family AT1G74250 39.130 3.87e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1568g00010 K09503 - gmx:547558 661.759