Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1568g00009 ATGTTTGGAAGGGCACCGAAGAAGAGCGACAGCAGCAGGTACTATGAAATCCTCGGAATCTCCAATAACGCTTCTCAGGAAGATGTGAAGAAGGCTTACAAGAAACTCGCCATTAAGGCTCATCCCGACAAGGGTGGTGATCCCGAGAAGTTCAAAGAGATTGGAGAAGCTTATCAGGTTCTGGCGGACCCTGAAAAGCGTGAGATATATGATCAATATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGTGGGGGTGGTGGCCCTGACCCATTTGATATATTCCAGTCTTTCTTTGGTGGGAGTCCATTTTCAGGTGGTAGTAGTAGAGGACGAAGGCAGAGACGTGGAGAAGATGTTGTTCACCCTCTCAAGGTCTCTTTGGACGATCTTTACCTTGGGACATCCAAGAAGCTCTCCCTCTCTAGAAATGTTATATGCTCAAAGTGCAGTGGCAAAGGTTCTAAGTCTGGAGTTGCCCCGAGCTGTGTTGCTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACAGATTGGTCCCGGTATGATTCAGCAAATGCAGCATCCTTGCAATGAGTGTAAAGGTACTGGAGAAACTATCAGTGACAGAGACCGCTGCCCGCTGTGCAAGGGAGAGAAAGTTGTCCAAGAGAAGAAAGTACTTGAAGTTGTTGTTGAGAAGGGAATGCAGAATGGGCAGAAAATTACATTCCCTGGTGAAGCTGATGAAGCGCCAGACACAATTACTGGGGATATTGTTTTTGTGCTTCAGCAGAAGGAACATCCCAAGTTTAGAAGAAAGGGTGAAGATCTTTTTGTAGAGCATAATTTGTCCCTTACTGAGGCTTTATGTGGCTTCCAATTTGTGCTGACCCACTTTGATGGCCGGCAGCTCCTTATCAAATCAAACCCTGGGGAAGTTGTCAAGCCTGATTCATACAAGGCTATTAATGATGAGGGAATGCCGATGTACCAGAGGCCATTCATGAAGGGGAAGCTTTACATTCACTTTACTGTGGAATTCCCTGATTCTCTAAATCCTGATCAGGTCAAGGCTTTTGAGGCTGTTCTGCCAGCAAAGCTTTCATCACAGTTGACAGAAATGGAGCTGGACGAATGTGAGGAAACTACACTTCATGATGTCAATATGGAGGAAGAGTCAAGGAGGAAGAAGCAGCAAGCTCAGCAGGAGGCATATGAGGATGATGATGACGATGATGATATGCCTGGTGGTGCACAAAGGGTACAGTGCGCCCAGCAGTAG 1263 0.4632 MFGRAPKKSDSSRYYEILGISNNASQEDVKKAYKKLAIKAHPDKGGDPEKFKEIGEAYQVLADPEKREIYDQYGEDALKEGMGGGGGGPDPFDIFQSFFGGSPFSGGSSRGRRQRRGEDVVHPLKVSLDDLYLGTSKKLSLSRNVICSKCSGKGSKSGVAPSCVACQGTGMKVSIRQIGPGMIQQMQHPCNECKGTGETISDRDRCPLCKGEKVVQEKKVLEVVVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKGEDLFVEHNLSLTEALCGFQFVLTHFDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPDQVKAFEAVLPAKLSSQLTEMELDECEETTLHDVNMEEESRRKKQQAQQEAYEDDDDDDDMPGGAQRVQCAQQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1568g00009 420 CDD DnaJ 14 63 IPR001623 -
Gabi1568g00009 420 Pfam DnaJ domain 14 71 IPR001623 -
Gabi1568g00009 420 CDD DnaJ_C 118 345 - -
Gabi1568g00009 420 Gene3D - 110 259 - -
Gabi1568g00009 420 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Gabi1568g00009 420 Gene3D DnaJ domain 10 109 IPR036869 -
Gabi1568g00009 420 Hamap Chaperone protein DnaJ [dnaJ]. 10 381 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gabi1568g00009 420 Gene3D - 147 213 - -
Gabi1568g00009 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 352 IPR008971 GO:0006457|GO:0051082
Gabi1568g00009 420 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gabi1568g00009 420 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Gabi1568g00009 420 MobiDBLite consensus disorder prediction 377 420 - -
Gabi1568g00009 420 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 216 IPR036410 -
Gabi1568g00009 420 MobiDBLite consensus disorder prediction 377 397 - -
Gabi1568g00009 420 Gene3D - 261 343 - -
Gabi1568g00009 420 Pfam DnaJ C terminal domain 121 342 IPR002939 -
Gabi1568g00009 420 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 398 IPR044713 GO:0006457|GO:0030544
Gabi1568g00009 420 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
Gabi1568g00009 420 FunFam Chaperone protein DNAj, putative 10 111 - -
Gabi1568g00009 420 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Gabi1568g00009 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 118 262 IPR008971 GO:0006457|GO:0051082
Gabi1568g00009 420 Coils Coil 382 402 - -
Gabi1568g00009 420 FunFam DnaJ subfamily A member 2 147 213 - -
Gabi1568g00009 420 SMART dnaj_3 12 66 IPR001623 -
Gabi1568g00009 420 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gabi1568g00009 420 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gabi1568g00009 420 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gabi1568g00009 420 SUPERFAMILY Chaperone J-domain 9 106 IPR036869 -
Gabi1568g00009 420 FunFam DnaJ subfamily A member 2 261 343 - -
Gabi1568g00009 420 FunFam Chaperone protein dnaJ 3 214 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1568g00009 Gabi-Chr1568 191496 193894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1568g00009 14 112 C2H2 Transcription Factor Family AT1G74250 35.088 8.23e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1568g00009 K09503 - gmx:547558 661.759