Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1568g00003 ATGGATGTTGATTCCTCGATGGTGCCGGAGACCGATCACGATCCTGCGGTGGAGAACCATCCCGATAGAGAGCAGCTAGTGGAGCCGCCTTTGTCATCGTCGGGCGGCGGATCTCCGGCGCAACCGCCGGTGCAGCAGCAGCAGCAACAGCAACAGCAGGTAACGGCGGCTGCTCAGGTGCAGGGAAGTCCGGTAGTTGGTCCGAGGCTCGCGCCGACTTACTCAGTGGTGAATGCGATTTTGGAGAAGAAAGAGGATGGTCCAGGGCCGCGGTGCGGCCACACGCTGACGGCAGTTGCGGCAGTGGGAGAGGAGGGCACGCCCGGGTACATTGGTACGAGACTGATTTTGTTCGGCGGTGCCACTGCTCTTGAAGGGAATTCTGCGGCTTCAGGGACTCCTTCATCCGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACTGCTGATGTCCACTGTTATGATGTCTTGACTAATAAATGGTCTAGGATAACTCCGTTTGGAGAGCCTCCAACCCCAAGGGCAGCACACGTGGCGACTGCTGTGGGAACGATGGTAGTTATTCAGGGTGGCATTGGTCCTGCTGGATTGTCAGCAGAGGACCTTCATGTTCTTGACCTCACTCAGCATCGGCCACGATGGCATAGAGTTGGTGTTCCGGGCCCGGGACCAGGGCCACGTTATGGACATGTTATGGCTTTGGTGGGGCAGAGGTATCTCATGGCAATTGGAGGAAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACGGCGGCCAAGCCTTATGAATGGCGCAAGTTGGAGCCAGAAGGAGAAGGTCCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTGGCAAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCTGGTGTCTCACCATCTCCTAGATATCAGCATGCAGCAGTATTTGTTAATGCAAGGCTCCATGTGTCTGGCGGAGCTCTTGGCGGAGGCCGAATGGTAGAAGACTCGTCAAGTGTCGCAGTGTTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACAGGTAGATACAGTGCTGATGCAGCTGGTGGGGATGCCTCAGTTGAGTTGACTCGGCGTTGTAGGCATGCAGCGGCTGCTGTTGGGGACCTAATTTTTCTTTACGGTGGTTTACGTGGCGGAGTCTTGCTGGATGATCTACTTGTTGCTGAAGATCTTGCTGCTGCCGAAACAACAACTGCTGCTTCACATGCTGCTGCAGCAGCTGCATCTGATTTACAAGTGGGACGGCTATCTGGACAATATGGATTTGTTGATGATGGGACAAGGCAAACAATGCCTGAAGCGACTTCTGATGGTGCAGTTGTTTTGGGGAATCCAGTTGCTCCCCCTGTAAATGGTGACATATATACTGATATCAGCACTGAAAATGCCATGCTTCAAGGATCTAGGCGAACTAGCAAAGGAGTTGAGTATCTGGTTGAAGCATCAGCTGCAGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCCAAGGCACGACAAGTGAATGGAGAAGTTGAATTGCCTGACCGAGACCGTGGGGCTGAGGCTACCCCTAGTGGGAAACAAATATCTTCCTTGATTAAGCCTGATTCTGCAGGGCTAGATAGCATCGCTCAAGGTGGAGTTAGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGAGCATTAGGTGGCATGGTTAGACAGCTTTCAATTGATCAGTTTGAAAATGAAGGCAGGCGGGTCAGTTATGGGACTCCAGAAAATGCAACGGCAGCTAGAAAATTATTAGATCGGCAGATGTCTATCAATAGTGTCCCTAAGAAGGTCATAGCACACCTATTAAAGCCTCGTGGCTGGAAACCACCAGTTCGCCGGCAGTTTTTCTTGGATTGCAATGAAATTGCGGATCTTTGTGACAGTGCAGAGCGGATATTTTCTAGTGAACCAAGTGTCTTACAGCTTAGGGCACCAATTAAAATATTTGGTGATTTGCATGGGCAGTTTGGGGATCTTATGCGCCTCTTTGATGAGTATGGGGCACCATCAACTGCTGGTGACATAGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATAGGGGCCAGCACAGCCTCGAAACTATAAGCCTTCTGCTTGCTCTAAAGGTTGAGTATCCAAACAATGTACATTTAATACGTGGAAATCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTCCGAATTGAGTGCATCGAGAGGCTGGGTGAGAGAGATGGAATTTGGGCATGGCACCGGATAAACCGTCTGTTTAATTGGCTTCCTCTGGCAGCTCTAATTGAGAAAAAAATTATTTGCATGCACGGGGGTATTGGTCGTTCAATAAATCATTTGGAGCAAATTGAGAATATTCAGCGTCCGATTACAATGGAAGCAGGATCAATTGTGCTTATGGATCTATTATGGTCTGATCCTACAGAGAATGACAGCGTGGAAGGGCTGCGGCCAAATGCTAGAGGTCCAGGGTTAGTTACTTTTGGGCCTGATCGGGTCATGGAATTTTGCAACAACAATGATCTTCAGCTGATTGTCCGTGCACATGAATGTGTGATGGATGGCTTTGAGCGTTTTGCCCAGGGACATCTGATCACACTTTTCTCGGCTACAAACTACTGTGGTACTGCAAATAATGCTGGGGCAATATTAGTTTTGGGCAGAGATCTTGTTGTGGTTCCTAAACTGATTCATCCATTACCACCTGCAATTTCTTCACCAGAAACTTCACCAGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACCGACCACCAACACCAACTAGAGGCCGTCCTCAAGTGGCAAATGACCGAGGTTCGCTTGCTTGGATATAG 3015 0.4959 MDVDSSMVPETDHDPAVENHPDREQLVEPPLSSSGGGSPAQPPVQQQQQQQQQVTAAAQVQGSPVVGPRLAPTYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGTRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQHRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAVGDLIFLYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAASDLQVGRLSGQYGFVDDGTRQTMPEATSDGAVVLGNPVAPPVNGDIYTDISTENAMLQGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQISSLIKPDSAGLDSIAQGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERLGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSLAWI 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1568g00003 1004 FunFam Serine/threonine-protein phosphatase 637 977 - -
Gabi1568g00003 1004 ProSitePatterns Serine/threonine specific protein phosphatases signature. 770 775 IPR006186 GO:0016787
Gabi1568g00003 1004 Gene3D - 637 976 IPR029052 -
Gabi1568g00003 1004 Gene3D - 199 458 IPR015915 GO:0005515
Gabi1568g00003 1004 MobiDBLite consensus disorder prediction 31 60 - -
Gabi1568g00003 1004 SUPERFAMILY Metallo-dependent phosphatases 658 964 IPR029052 -
Gabi1568g00003 1004 SMART pp2a_7 673 957 IPR006186 GO:0016787
Gabi1568g00003 1004 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1004 - -
Gabi1568g00003 1004 SUPERFAMILY Kelch motif 146 435 IPR015915 GO:0005515
Gabi1568g00003 1004 FunFam Serine/threonine-protein phosphatase 70 267 - -
Gabi1568g00003 1004 Pfam Kelch motif 332 378 IPR011498 GO:0005515
Gabi1568g00003 1004 PRINTS Serine/threonine phosphatase family signature 807 833 IPR006186 GO:0016787
Gabi1568g00003 1004 PRINTS Serine/threonine phosphatase family signature 701 728 IPR006186 GO:0016787
Gabi1568g00003 1004 PRINTS Serine/threonine phosphatase family signature 736 763 IPR006186 GO:0016787
Gabi1568g00003 1004 PRINTS Serine/threonine phosphatase family signature 837 864 IPR006186 GO:0016787
Gabi1568g00003 1004 PRINTS Serine/threonine phosphatase family signature 769 793 IPR006186 GO:0016787
Gabi1568g00003 1004 PRINTS Serine/threonine phosphatase family signature 897 917 IPR006186 GO:0016787
Gabi1568g00003 1004 PRINTS Serine/threonine phosphatase family signature 919 935 IPR006186 GO:0016787
Gabi1568g00003 1004 PIRSF STPPP_BSU1 35 1004 IPR012391 GO:0004721|GO:0009742
Gabi1568g00003 1004 MobiDBLite consensus disorder prediction 980 1004 - -
Gabi1568g00003 1004 MobiDBLite consensus disorder prediction 1 60 - -
Gabi1568g00003 1004 MobiDBLite consensus disorder prediction 1 25 - -
Gabi1568g00003 1004 Gene3D - 73 198 IPR015915 GO:0005515
Gabi1568g00003 1004 FunFam Serine/threonine-protein phosphatase 271 470 - -
Gabi1568g00003 1004 Pfam Galactose oxidase, central domain 226 279 - -
Gabi1568g00003 1004 Pfam Calcineurin-like phosphoesterase 701 908 IPR004843 GO:0016787
Gabi1568g00003 1004 CDD MPP_Bsu1_C 653 955 IPR041758 -
Gabi1568g00003 1004 MobiDBLite consensus disorder prediction 552 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1568g00003 Gabi-Chr1568 69970 84743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1568g00003 665 900 Calmodulin-binding Proteins AT5G63870 29.412 2.76e-26 108