Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1568g00002 ATGGATGTTGATTCCTCGATGGTGCCGGAGACCGATCACGATCCTGCGGTGGAGAACCATCCCGATAGAGAGCAGCTAGTGGAGCCGCCTTTGTCATCGTCGGGCGGCGGATCTCCGGCGCAACCGCCGGTGCAGCAGCAGCAGCAACAGCAACAGCAGGTAACGGCGGCTGCTCAGGTGCAGGGAAGTCCGGTAGTTGGTCCGAGGCTCGCGCCGACTTACTCAGTGGTGAATGCGATTTTGGAGAAGAAAGAGGATGGTCCAGGGCCGCGGTGCGGCCACACGCTGACGGCAGTTGCGGCAGTGGGAGAGGAGGGCACGCCCGGGTACATTGGTACGAGACTGATTTTGTTCGGCGGTGCCACTGCTCTTGAAGGGAATTCTGCGGCTTCAGGGACTCCTTCATCCGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACTGCTGATGTCCACTGTTATGATGTCTTGACTAATAAATGGTCTAGGATAACTCCGTTTGGAGAGCCTCCAACCCCAAGGGCAGCACACGTGGCGACTGCTGTGGGAACGATGGTAGTTATTCAGGGTGGCATTGGTCCTGCTGGATTGTCAGCAGAGGACCTTCATGTTCTTGACCTCACTCAGCATCGGCCACGATGGCATAGAGTTGGTGTTCCGGGCCCGGGACCAGGGCCACGTTATGGACATGTTATGGCTTTGGTGGGGCAGAGGTATCTCATGGCAATTGGAGGAAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACGGCGGCCAAGCCTTATGAATGGCGCAAGTTGGAGCCAGAAGGAGAAGGTCCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTGGCAAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCTGGTGTCTCACCATCTCCTAGATATCAGCATGCAGCAGTATTTGTTAATGCAAGGCTCCATGTGTCTGGCGGAGCTCTTGGCGGAGGCCGAATGGTAGAAGACTCGTCAAGTGTCGCAGTGTTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACAGGTAGATACAGTGCTGATGCAGCTGGTGGGGATGCCTCAGTTGAGTTGACTCGGCGTTGTAGGCATGCAGCGGCTGCTGTTGGGGACCTAATTTTTCTTTACGGTGGTTTACGTGGCGGAGTCTTGCTGGATGATCTACTTGTTGCTGAAGATCTTGCTGCTGCCGAAACAACAACTGCTGCTTCACATGCTGCTGCAGCAGCTGCATCTGATTTACAAGTGGGACGGCTATCTGGACAATATGGATTTGTTGATGATGGGACAAGGCAAACAATGCCTGAAGCGACTTCTGATGGTGCAGTTGTTTTGGGGAATCCAGTTGCTCCCCCTGTAAATGGTGACATATATACTGATATCAGCACTGAAAATGCCATGCTTCAAGGATCTAGGCGAACTAGCAAAGGAGTTGAGTATCTGGTTGAAGCATCAGCTGCAGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCCAAGGCACGACAAGTGAATGGAGAAGTTGAATTGCCTGACCGAGACCGTGGGGCTGAGGCTACCCCTAGTGGGAAACAAATATCTTCCTTGATTAAGCCTGATTCTGCAGGGCTAGATAGCATCGCTCAAGGTGGAGTTAGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGAGCATTAGGTGGCATGGTTAGACAGCTTTCAATTGATCAGTTTGAAAATGAAGGCAGGCGGGTCAGTTATGGGACTCCAGAAAATGCAACGGCAGCTAGAAAATTATTAGATCGGCAGATGTCTATCAATAGTGTCCCTAAGAAGGTCATAGCACACCTATTAAAGCCTCGTGGCTGGAAACCACCAGTTCGCCGGCAGTTTTTCTTGGATTGCAATGAAATTGCGGATCTTTGTGACAGTGCAGAGCGGATATTTTCTAGTGAACCAAGTGTCTTACAGCTTAGGGCACCAATTAAAATATTTGGTGATTTGCATGGGCAGTTTGGGGATCTTATGCGCCTCTTTGATGAGTATGGGGCACCATCAACTGCTGGTGACATAGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATAGGGGCCAGCACAGCCTCGAAACTATAAGCCTTCTGCTTGCTCTAAAGGTTGAGTATCCAAACAATGTACATTTAATACGTGGAAATCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTCCGAATTGAGTGCATCGAGAGGCTGGGTGAGAGAGATGGAATTTGGGCATGGCACCGGATAAACCGTCTGTTTAATTGGCTTCCTCTGGCAGCTCTAATTGAGAAAAAAATTATTTGCATGCACGGGGGTATTGGTCGTTCAATAAATCATTTGGAGCAAATTGAGAATATTCAGCGTCCGATTACAATGGAAGCAGGATCAATTGTGCTTATGGATCTATTATGGTCTGATCCTACAGAGAATGACAGCGTGGAAGGGCTGCGGCCAAATGCTAGAGGTCCAGGGTTAGTTACTTTTGGGCCTGATCGGGTCATGGAATTTTGCAACAACAATGATCTTCAGCTGATTGTCCGTGCACATGAATGTGTGATGGATGGCTTTGAGCGTTTTGCCCAGGGACATCTGATCACACTTTTCTCGGCTACAAACTACTGTGGTACTGCAAATAATGCTGGGGCAATATTAGTTTTGGGCAGAGATCTTGTTGTGGTTCCTAAACTGATTCATCCATTACCACCTGCAATTTCTTCACCAGAAACTTCACCAGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACCGACCACCAACACCAACTAGAGGCCGTCCTCAAGTGGCAAATGACCGAGCATGA 3000 0.496 MDVDSSMVPETDHDPAVENHPDREQLVEPPLSSSGGGSPAQPPVQQQQQQQQQVTAAAQVQGSPVVGPRLAPTYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGTRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQHRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAVGDLIFLYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAASDLQVGRLSGQYGFVDDGTRQTMPEATSDGAVVLGNPVAPPVNGDIYTDISTENAMLQGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQISSLIKPDSAGLDSIAQGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERLGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVANDRA 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1568g00002 999 Pfam Galactose oxidase, central domain 226 279 - -
Gabi1568g00002 999 Pfam Kelch motif 332 378 IPR011498 GO:0005515
Gabi1568g00002 999 ProSitePatterns Serine/threonine specific protein phosphatases signature. 770 775 IPR006186 GO:0016787
Gabi1568g00002 999 Gene3D - 637 976 IPR029052 -
Gabi1568g00002 999 Pfam Calcineurin-like phosphoesterase 701 908 IPR004843 GO:0016787
Gabi1568g00002 999 FunFam Serine/threonine-protein phosphatase 271 470 - -
Gabi1568g00002 999 MobiDBLite consensus disorder prediction 31 60 - -
Gabi1568g00002 999 FunFam Serine/threonine-protein phosphatase 637 977 - -
Gabi1568g00002 999 PIRSF STPPP_BSU1 35 999 IPR012391 GO:0004721|GO:0009742
Gabi1568g00002 999 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 998 - -
Gabi1568g00002 999 Gene3D - 73 196 IPR015915 GO:0005515
Gabi1568g00002 999 SMART pp2a_7 673 957 IPR006186 GO:0016787
Gabi1568g00002 999 SUPERFAMILY Metallo-dependent phosphatases 658 964 IPR029052 -
Gabi1568g00002 999 Gene3D - 197 458 IPR015915 GO:0005515
Gabi1568g00002 999 SUPERFAMILY Kelch motif 146 435 IPR015915 GO:0005515
Gabi1568g00002 999 PRINTS Serine/threonine phosphatase family signature 769 793 IPR006186 GO:0016787
Gabi1568g00002 999 PRINTS Serine/threonine phosphatase family signature 897 917 IPR006186 GO:0016787
Gabi1568g00002 999 PRINTS Serine/threonine phosphatase family signature 919 935 IPR006186 GO:0016787
Gabi1568g00002 999 PRINTS Serine/threonine phosphatase family signature 736 763 IPR006186 GO:0016787
Gabi1568g00002 999 PRINTS Serine/threonine phosphatase family signature 807 833 IPR006186 GO:0016787
Gabi1568g00002 999 PRINTS Serine/threonine phosphatase family signature 837 864 IPR006186 GO:0016787
Gabi1568g00002 999 PRINTS Serine/threonine phosphatase family signature 701 728 IPR006186 GO:0016787
Gabi1568g00002 999 MobiDBLite consensus disorder prediction 977 999 - -
Gabi1568g00002 999 FunFam Serine/threonine-protein phosphatase 70 267 - -
Gabi1568g00002 999 MobiDBLite consensus disorder prediction 1 60 - -
Gabi1568g00002 999 MobiDBLite consensus disorder prediction 1 25 - -
Gabi1568g00002 999 CDD MPP_Bsu1_C 653 955 IPR041758 -
Gabi1568g00002 999 MobiDBLite consensus disorder prediction 552 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1568g00002 Gabi-Chr1568 69970 84745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1568g00002 665 900 Calmodulin-binding Proteins AT5G63870 29.412 2.62e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1568g00002 - - gmx:100788485 1756.5