Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1565g00001 AAAGTTGAGGCACTGGACTTTGATGAGTCTTTCCGGCTTTTCAAGTTGAATGCCTTTGAACATAATCATATTGACATAGAATACTATGAACTGTCTAAGAGCATGGTCGATTATGCCAAAGGCGTTCCAGTAGTTCTTAAAGTCTTGGGTCATCTTCTTCGTGGAAAAGATAAAGAAATATGGGAAAGCCAATCAAAAAGGCTCAAAAAAGTGCCCAATAAAAAGGTTCATGATGTTATTAAGATTAGCATTGATGAGGATCTTGATCATGATGAGAAGAAGATATTTTTGGATATTGCATGTTTTTTCGATGGATTGAATTTGAATGTTGACAAAATAAAACTTCTATTAAAGGATCGTGATTATTCTGTTGCTGCTGCGTTAGAAAGGTTAAAAGATAAAGCTCTTATAACTATTTCTCAAAAGAATATTGTATCCATGCATAACATTATACAAGAAACAGCTTGGGAGATGGTTCGCCAAGAATCTATTGAAGACCCCGGACACCGAAGTCGACTGTTGGATACTGATGACATTTATCAAGTACTGAAAAATAACAAGGGGAGTGAGGCCATCAGAAGCATAGTCCTCAACTCGTCGATGATTAAGGAGCTGCAGTTAAGCCCTCAAGTATTTGCTAAGATGAGCAAACTACAATTTCTTGATTTGTATTGTGATTGGCCTTATAAAGTGTTGTATCTTCCTCAAGGGCTTGAATCTTTGCCAAATGAACTACGATATCTTCGGTGGGCTTCCTACCCTTTGGAATCCTTGCCATCCAAGTTTTCTGCGGAAAATCTTGTTGAATTGAACTTGCCCTACAGCCGAGTGAAAAAACTTTGGCACCAAGTGCAGGAACTTGAGAATTTAAACACCCTCGTACTGCATTCATCCACAAGCCTGCTGGAACTGCCAGACTTTTCAAAGGCCACAAATCTTAAAGTCATAGATCTCCGTTTTTGTCTAGAGCTGACTAGTGTGCATCCATCCGTTTTCTCTCTCAACAAGCTTGAGAAATTGGATCTAGGTGGATGCATTTCCCTTTCAACCCTTGGAAGCAATATCCATCTGAGCTCCCTTCGTTTTCTCTCCCTCAATGGCACGGGTATCAAACAACTACCCTCCTCTATTGAACTTCAAAGCAAACTTCAAAAGCTAAATCTAGCATGCACTTACATTGAGAACTTGCCTACAAGCATCAAGCATCTTACAAAGCTTCGACATCTAGATATTCGCCACTGTAGCGAGCTTCCGACTATACCTGAGCTTCCCCCATCACTTGAAATACTAGATGCCAGTGGCTGCATATCACTGGAGAGTGTGTTGTTCCCTTCAACCACTAGTGAACAACTGAATGAAAACAAGAAAAGGGTAGCCTTCTGGAATTGCTTGAAATTGGATGAACATTCTCTCAGGGCTATTGAGCTGAATGCGCAAGTTAACATGATGAAATTTGCATTCCAACATTTATCCACATTTGGTCGTGATTATGATGCTCAAATCACTAATGTTAATGCTGCTCAAAGCACTTATGTGTATCCGGGAAGCAAAGTTCCAGAGTGGCTGGTGTATGGGACAACACAAGACTCCCTAACTATTGATCTCTCTTTTGGTCCGCAGTCCCCTGAGATGGGCTTCATTTTTTGCTTCGTAGTTCCGCAGGTTCAATCAGAGGGTTTGTTTTTTAAATTTAAGATCAGTGTTGGTGAAGATGAAGGTAACACTGTGTACCTGGACAGACCACGTCATGGAATTATATCGGATCATGTGTATCTAATGTATGACCAAGGATGTTCCAGCTACCTGAATAGCCAAGCCAAACATCAGCCAAGGTTTAAAATCAAGGTTACAGCAGCATCGCGAACACTGACATCACAGTACGTGCCATTGCTGTTAAGAGGGTTTGGGGTCAGCCCAGTAGATGCCTCACAATATCTCAGTTTTCTTCAACAAATATTTGAATGA 1965 0.4061 KVEALDFDESFRLFKLNAFEHNHIDIEYYELSKSMVDYAKGVPVVLKVLGHLLRGKDKEIWESQSKRLKKVPNKKVHDVIKISIDEDLDHDEKKIFLDIACFFDGLNLNVDKIKLLLKDRDYSVAAALERLKDKALITISQKNIVSMHNIIQETAWEMVRQESIEDPGHRSRLLDTDDIYQVLKNNKGSEAIRSIVLNSSMIKELQLSPQVFAKMSKLQFLDLYCDWPYKVLYLPQGLESLPNELRYLRWASYPLESLPSKFSAENLVELNLPYSRVKKLWHQVQELENLNTLVLHSSTSLLELPDFSKATNLKVIDLRFCLELTSVHPSVFSLNKLEKLDLGGCISLSTLGSNIHLSSLRFLSLNGTGIKQLPSSIELQSKLQKLNLACTYIENLPTSIKHLTKLRHLDIRHCSELPTIPELPPSLEILDASGCISLESVLFPSTTSEQLNENKKRVAFWNCLKLDEHSLRAIELNAQVNMMKFAFQHLSTFGRDYDAQITNVNAAQSTYVYPGSKVPEWLVYGTTQDSLTIDLSFGPQSPEMGFIFCFVVPQVQSEGLFFKFKISVGEDEGNTVYLDRPRHGIISDHVYLMYDQGCSSYLNSQAKHQPRFKIKVTAASRTLTSQYVPLLLRGFGVSPVDASQYLSFLQQIFE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1565g00001 654 Pfam Leucine Rich Repeat 266 281 IPR011713 -
Gabi1565g00001 654 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 439 IPR044974 GO:0006952
Gabi1565g00001 654 SUPERFAMILY L domain-like 195 470 - -
Gabi1565g00001 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 99 IPR027417 -
Gabi1565g00001 654 Pfam NB-ARC domain 1 72 IPR002182 GO:0043531
Gabi1565g00001 654 SUPERFAMILY "Winged helix" DNA-binding domain 74 184 IPR036390 -
Gabi1565g00001 654 Gene3D - 4 89 IPR042197 -
Gabi1565g00001 654 Gene3D Ribonuclease Inhibitor 176 326 IPR032675 -
Gabi1565g00001 654 Gene3D Ribonuclease Inhibitor 327 475 IPR032675 -
Gabi1565g00001 654 PRINTS Disease resistance protein signature 39 53 - -
Gabi1565g00001 654 PRINTS Disease resistance protein signature 401 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1565g00001 Gabi-Chr1565 1435 4126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1565g00001 28 530 WRKY Transcription Factor Family AT4G12020 37.016 6.09e-70 246