Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1564g00011 ATGTTCTTTGCACTTACTATACATATGCAAGACCTCATTAAAGACTCAGTGAAATACTTTTGTTTCACCAATAAGCTGTGTTCAAGAATTAGAACAAGTTTGATCATGACAGACATGTTTGAAAAGCAACCATCTCCTGATGCTTCAAATTATGCATCAAGCAGTGGCCTCTCTGGGGATGATAAAGAGATTGGGTATAGAGCTGCAACATCAAGCCATCAATGTCTTTTGGCCATTAACTCTGCTCTTCACTTCTTACCATTCAAAATTGACCTGAACTTTGCTCGCATGGTCATGGCAGAGGTGGTGGGTACTTTTATTTTGATGTTCTGTGTATGTGGAATCATTGCAAGCACACAATTCCAAAATGGTGCAGTTGGCCTTCTGGAGTATGCAGCTACAGCAGGATTAACAGTGATTGTGATAATTTTCTCTATAGGACCAATATCTTGTGCACATGTTAACCCAGCTGTCACAATAGCCTTTGCAACAATTGGTCAATTTCCATGGTTCAAGGTTCCAATTTACATAATAGCACAAACAGTAGGTTCTATGTCGGCAACATATATAGGTAGCCTTGTCTATGGCATAAAATCAGATGCTATGATGACACAGCCACTCCAAGGATGCAACTCAGCCTTCTGGGTGGAGGTTATTGCAACTTTCATCATCATGTTCCTGGTTGCAGCTTTGACATCTGAATCTCAATCAGTTGGCCATTTATCTGGCTTTGTTGCTGGAATAGCAATTGGGCTTGCTGTACTAATCACAGGCCCTGTCTCAGGTGGATCAATGAATCCTGCAAGATCATTAGGTCCAGCAATTCTCTCATGGAAATTTAAGGATATATGGATATACATCATAGCCCCAAGTGCTGGAGCTGTAGCAGGAGCTCTAATGTTTCGTTTCCTACGTATTAGAGACCAACATTGTAGCACTTTGTCATCACCAAACATCAGTGATGTTCATGTTGGTCGTCCCATACCCTTTTGTTCAAGTTAG 1002 0.4102 MFFALTIHMQDLIKDSVKYFCFTNKLCSRIRTSLIMTDMFEKQPSPDASNYASSSGLSGDDKEIGYRAATSSHQCLLAINSALHFLPFKIDLNFARMVMAEVVGTFILMFCVCGIIASTQFQNGAVGLLEYAATAGLTVIVIIFSIGPISCAHVNPAVTIAFATIGQFPWFKVPIYIIAQTVGSMSATYIGSLVYGIKSDAMMTQPLQGCNSAFWVEVIATFIIMFLVAALTSESQSVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAILSWKFKDIWIYIIAPSAGAVAGALMFRFLRIRDQHCSTLSSPNISDVHVGRPIPFCSS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1564g00011 333 ProSitePatterns MIP family signature. 153 161 IPR022357 -
Gabi1564g00011 333 Gene3D Glycerol uptake facilitator protein. 77 314 IPR023271 -
Gabi1564g00011 333 Pfam Major intrinsic protein 93 301 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1564g00011 333 SUPERFAMILY Aquaporin-like 92 309 IPR023271 -
Gabi1564g00011 333 PANTHER AQUAPORIN NIP2-1 78 310 IPR034294 -
Gabi1564g00011 333 PRINTS Major intrinsic protein family signature 284 304 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1564g00011 333 PRINTS Major intrinsic protein family signature 216 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1564g00011 333 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1564g00011 333 PRINTS Major intrinsic protein family signature 247 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1564g00011 333 PRINTS Major intrinsic protein family signature 135 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1564g00011 333 PRINTS Major intrinsic protein family signature 172 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1564g00011 Gabi-Chr1564 203222 205167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1564g00011 96 316 Major Intrinsic Protein MIP AT5G37820 38.739 4.73e-54 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1564g00011 K09874 - gmx:100817660 429.483