Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1564g00002 ATGGTGGGTGAGAAATTTTGTGTGAACGAAGAAGACAAGGGTGTGTTTGAATCTGTGTTGGGTCCAGAAGCTGTTGCTTTCTTTATTTCTGCTGTTAGTAATAATGTATTTTCCGGCGTGGTTGCTCCTCCACACGGTGCTCACCCGGGTCTTCACCAGCGGTTGTGCCAGCTTGTTGAGGTTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCCGGCTTGAAATCTGGTGGCTCTGCCTTGATTTGGGGTGATGGGCATTGCGGGGATGCGAAAGGGGACGGAGCTGGGAAGGAGGATGAGGAGGAGGCGAGAAAGAAGGTGCTGAAGAAGCTTGATGCCTGCTTTGCTATCTCTGTGTCAAAAGAGGCTAATTATGCAAGGTTGGGTAGGGTCTCGGATATGCATATGTTTTACTTAGTCTCAAGGTTTTATATATTTGGTTTTGATTCGCCATGTGGCCCTGGCAGTTCTTTCAAGTCTGGTAAATCAATTTGGGCTTCTGATGCTGATACTTGTTTAAATCAATTAGAATCTAGGTCATTTCTGGGGAAATTAGCTGGCCTTCAAACAGTTGTATTTGTACCTCTAAAAGCCGGGGTTGTGGAGCTTGGTTCAATGGAATCAATGCCTGAAGAGCAGGGTGTTGTGGAGATGGTTAGGACAACATTTGGAGAATCTAGTTCGGGACAGGGAAAGGTGTTTCCCAAGATTTTTGGGCGTGAACTAAGCCTAGGGGATACAAAATCTCAGTCCATAACTATTAGTTTCTCCCCAAAGGTGGAAGATGATTCTGGTTTCACTTCAGACTCTTATGAAGTTCAAGCTCTAGGAGCTAACCATGCTTATGGAAATTCTTCCAATGGGAGTATAGGTGACAATAATGAAGCGAGATTGTTCCCTCAATTAAATCAAATGATTGCTGGGAGTTTTAATGCTCAAGCAAGGGCTTCTTGTCTAGAACTTGGTAATGAAGACTCATCCTCAACTCATCCAGATGAGCGGAAGCCCAGAAAAAGAGGTAGAAAGCCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAGAGACGGGAGAAGCTTAACCAAAGGTTTTATGCCTTAAGAGCTGTTGTTCCTAATATATCTAAGATGGACAAGGCATCTCTGCTTGGTGATGCCATTACCTTTATTACTGATCTCCAGATGAAGATCAAGGTACTGGAAACTGAAAAGAACATGATTAACAATAAGGACCAAAAGTTGCCATTGTCAGATATTGATTTTCAGGATAGAGAGGATGATGCAGTTGTGACAGTAAGATACCCCTTGGATATTCATCCTGTTTCTGGAGTTGTTAAAACGTTAAGGGAGCATCAAATTGTGGCGCAAGAGTCCAGTGTTTCAACAGCAGAGGATAAGATAATTCATACATTCTCCATAAGAACACAGGGTGGGGAGGCTGCTGCTATGCAGTTGAAAGAAAAGCTTGAAGCATCCCTATCCAAAAATTGA 1509 0.4361 MVGEKFCVNEEDKGVFESVLGPEAVAFFISAVSNNVFSGVVAPPHGAHPGLHQRLCQLVEVSKWNYAVFWQVAGLKSGGSALIWGDGHCGDAKGDGAGKEDEEEARKKVLKKLDACFAISVSKEANYARLGRVSDMHMFYLVSRFYIFGFDSPCGPGSSFKSGKSIWASDADTCLNQLESRSFLGKLAGLQTVVFVPLKAGVVELGSMESMPEEQGVVEMVRTTFGESSSGQGKVFPKIFGRELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNGSIGDNNEARLFPQLNQMIAGSFNAQARASCLELGNEDSSSTHPDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLETEKNMINNKDQKLPLSDIDFQDREDDAVVTVRYPLDIHPVSGVVKTLREHQIVAQESSVSTAEDKIIHTFSIRTQGGEAAAMQLKEKLEASLSKN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1564g00002 502 SMART finulus 356 405 IPR011598 GO:0046983
Gabi1564g00002 502 MobiDBLite consensus disorder prediction 328 361 - -
Gabi1564g00002 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Gabi1564g00002 502 MobiDBLite consensus disorder prediction 323 361 - -
Gabi1564g00002 502 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
Gabi1564g00002 502 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 225 IPR025610 -
Gabi1564g00002 502 Gene3D - 343 416 IPR036638 GO:0046983
Gabi1564g00002 502 Coils Coil 396 416 - -
Gabi1564g00002 502 CDD bHLH_AtAIB_like 347 424 - -
Gabi1564g00002 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 417 IPR036638 GO:0046983
Gabi1564g00002 502 PANTHER MYC 47 498 IPR045084 GO:0003700|GO:0006355
Gabi1564g00002 502 FunFam Transcription factor bHLH13 343 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1564g00002 Gabi-Chr1564 85050 87302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1564g00002 2 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.732 4.53e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1564g00002 bHLH-MYC_N 1.1e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1564g00002 - - gmx:100819968 800.431