Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1560g00020 ATGGATTCGGATCAGGGAAAGCTTTTTATTGGTGGGATTTCGTGGGATACTAATGAAGACAAGCTGAAGGAGCATTTCAGCAACTATGGTGATGTATTGAGCACTTCAGTCATGAGGGAGAAGAACACTGGCAAGCCCAGAGGCTTTGGCTTTGTTGTCTTCGCAGATCCTTCTATTCTCGACAGGGTTCTCGAAGACAAGCACGTTATTGATGGAAGAACGGTTGATGCCAAGAGGGCCTTCTCAAGAGAGGATCAACAGATTTCTGTCACTTCCAGAGTTGGAAACCCCAATTCTTCTATGAATTCTGGAAGTGGTGGAAATATCAGGACAAAAAAGATATTTGTTGGAGGATTGCCTCCCACCCTGACTGAAGAAAATTTTCGTCAATACTTTGAATCTTATGGACATGTAACTGATGTAGTACTCATGTATGACCAGAATTCTGGACGACCCCGAGGATTTGGATTTATTTCTTTTGATAGTGAGGAAGCAGTTGATATGGTTTTGCACAAGTCGTTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCAAATCCTGGTGCAAGTGGCCGTATGAGTGGTGCTGGAGGTGGTGGATATCAAGGGTATGGGGCATCTAGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTACATGCAGCCTCAAAGCGCTGCAGGTGGATTCACGCCTTATGGCTCTTCTGCCTATAGTGCTCCTGGGTATGGGTATGGTCCAGCTAATAATGGCATTGGTTACGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCAACGTACGGGAATCCAAACGTCCCAAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGACTCCCTCTGGTTATGGGTCTATGGGCTATGGGAACACTGCTGCTTGGGGTGCTTCAAGTGGTGGTGCTGGATCTGGTGGAGGCGGCCCTGGTTCTGTCACTGCAGGTCAATCCCCTAGTGGAGCTGCTGGATATGGGAATCAGGGTTATGGATATGCTGGGTATGGTGGGTACGGTGGAAGTGATAGTTCATATGGGAATCCAGGTGTATATGGTGCTGTTGGAGGGCGTACTGGGAGTGCTCCAAATAGTAATGCTAGCGGGAGTGAACTACAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGTGGCTATGGGGATGCAAATGGAAATTCAGGCTTTGGAAATGCAGCTTGGAGGTCTGAACAAGCTCAGGCATCTGGAAACTATGGGACTCCTCATGGGAATGGCTCCCATGGTGGACAAGTTGGTTATAGTGGTGGCTATGGCAGTGTTCAGTCTCGACAAGCCCAACAACAGTAA 1413 0.482 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLSTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKRAFSREDQQISVTSRVGNPNSSMNSGSGGNIRTKKIFVGGLPPTLTEENFRQYFESYGHVTDVVLMYDQNSGRPRGFGFISFDSEEAVDMVLHKSFHDLNGKQVEVKRALPKDANPGASGRMSGAGGGGYQGYGASSGNQNAYDGRMDSSRYMQPQSAAGGFTPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQTPSGYGSMGYGNTAAWGASSGGAGSGGGGPGSVTAGQSPSGAAGYGNQGYGYAGYGGYGGSDSSYGNPGVYGAVGGRTGSAPNSNASGSELQGSGGSGSYMGSGYGDANGNSGFGNAAWRSEQAQASGNYGTPHGNGSHGGQVGYSGGYGSVQSRQAQQQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1560g00020 470 CDD RRM2_Hrp1p 113 190 - -
Gabi1560g00020 470 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gabi1560g00020 470 SMART rrm1_1 113 185 IPR000504 GO:0003723
Gabi1560g00020 470 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gabi1560g00020 470 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Gabi1560g00020 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Gabi1560g00020 470 MobiDBLite consensus disorder prediction 86 107 - -
Gabi1560g00020 470 Gene3D - 1 92 IPR012677 -
Gabi1560g00020 470 Gene3D - 107 228 IPR012677 -
Gabi1560g00020 470 FunFam heterogeneous nuclear ribonucleoprotein 1 107 224 - -
Gabi1560g00020 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Gabi1560g00020 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gabi1560g00020 470 MobiDBLite consensus disorder prediction 390 446 - -
Gabi1560g00020 470 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 470 - -
Gabi1560g00020 470 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Gabi1560g00020 470 MobiDBLite consensus disorder prediction 390 470 - -
Gabi1560g00020 470 SUPERFAMILY RNA-binding domain, RBD 111 217 IPR035979 GO:0003676
Gabi1560g00020 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1560g00020 Gabi-Chr1560 179486 183686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1560g00020 8 175 Eukaryotic Initiation Factors Gene Family AT2G36660 29.379 1.30e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1560g00020 K14411 - gmx:100811267 633.254