Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1560g00019 ATGGATTCGGATCAGGGAAAGCTTTTTATTGGTGGGATTTCGTGGGATACTAATGAAGACAAGCTGAAGGAGCATTTCAGCAACTATGGTGATGTATTGAGCACTTCAGTCATGAGGGAGAAGAACACTGGCAAGCCCAGAGGCTTTGGCTTTGTTGTCTTCGCAGATCCTTCTATTCTCGACAGGGTTCTCGAAGACAAGCACGTTATTGATGGAAGAACGGTTGATGCCAAGAGGGCCTTCTCAAGAGAGGATCAACAGATTTCTGTCACTTCCAGAGTTGGAAACCCCAATTCTTCTATGAATTCTGGAAGTGGTGGAAATATCAGGACAAAAAAGATATTTGTTGGAGGATTGCCTCCCACCCTGACTGAAGAAAATTTTCGTCAATACTTTGAATCTTATGGACATGTAACTGATGTAGTACTCATGTATGACCAGAATTCTGGACGACCCCGAGGATTTGGATTTATTTCTTTTGATAGTGAGGAAGCAGTTGATATGGTTTTGCACAAGTCGTTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCAAATCCTGGTGCAAGTGGCCGTATGAGTGGTGCTGGAGGTGGTGGATATCAAGGGTATGGGGCATCTAGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTACATGCAGCCTCAAAGCGCTGCAGGTGGATTCACGCCTTATGGCTCTTCTGCCTATAGTGCTCCTGGGTATGGGTATGGTCCAGCTAATAATGGCATTGGTTACGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCAACGTACGGGAATCCAAACGTCCCAAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGACTCCCTCTGGTTATGGGTCTATGGGCTATGGGAACACTGCTGCTTGGGGTGCTTCAAGTGGTGGTGCTGGATCTGGTGGAGGCGGCCCTGGTTCTGTCACTGCAGGTCAATCCCCTAGTGGAGCTGCTGGATATGGGAATCAGGGTTATGGATATGCTGGGTATGGTGGGTACGGTGGAAGTGATAGTTCATATGGGAATCCAGGTGTATATGGTGCTGTTGGAGGGCGTACTGGGAGTGCTCCAAATAGTAATGCTAGCGGGAGTGAACTACAAGGTACTCAGGCATCTGGAAACTATGGGACTCCTCATGGGAATGGCTCCCATGGTGGACAAGTTGGTTATAGTGGTGGCTATGGCAGTGTTCAGTCTCGACAAGCCCAACAACAGTAA 1323 0.48 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLSTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKRAFSREDQQISVTSRVGNPNSSMNSGSGGNIRTKKIFVGGLPPTLTEENFRQYFESYGHVTDVVLMYDQNSGRPRGFGFISFDSEEAVDMVLHKSFHDLNGKQVEVKRALPKDANPGASGRMSGAGGGGYQGYGASSGNQNAYDGRMDSSRYMQPQSAAGGFTPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQTPSGYGSMGYGNTAAWGASSGGAGSGGGGPGSVTAGQSPSGAAGYGNQGYGYAGYGGYGGSDSSYGNPGVYGAVGGRTGSAPNSNASGSELQGTQASGNYGTPHGNGSHGGQVGYSGGYGSVQSRQAQQQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1560g00019 440 CDD RRM2_Hrp1p 113 190 - -
Gabi1560g00019 440 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gabi1560g00019 440 SMART rrm1_1 113 185 IPR000504 GO:0003723
Gabi1560g00019 440 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gabi1560g00019 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Gabi1560g00019 440 MobiDBLite consensus disorder prediction 86 107 - -
Gabi1560g00019 440 Gene3D - 1 92 IPR012677 -
Gabi1560g00019 440 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Gabi1560g00019 440 MobiDBLite consensus disorder prediction 386 440 - -
Gabi1560g00019 440 FunFam heterogeneous nuclear ribonucleoprotein 1 107 224 - -
Gabi1560g00019 440 SUPERFAMILY RNA-binding domain, RBD 111 217 IPR035979 GO:0003676
Gabi1560g00019 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gabi1560g00019 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Gabi1560g00019 440 MobiDBLite consensus disorder prediction 388 416 - -
Gabi1560g00019 440 Gene3D - 96 229 IPR012677 -
Gabi1560g00019 440 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Gabi1560g00019 440 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 440 - -
Gabi1560g00019 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1560g00019 Gabi-Chr1560 179486 183687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1560g00019 8 201 Eukaryotic Initiation Factors Gene Family AT2G23350 22.886 4.54e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1560g00019 K14411 - gmx:100811267 573.933