Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1560g00012 GGTTTTTCGGATGAAATTTCAAGCCCTCTTAGTGCTCGAATTTTCGAGCTTTGTAACCCTGAATTTTTCCCAGAGGCTTTGCAGAATTCTGAGGTTACTTCAAGCTCAAATTGTTGCTATGAAGAGAACTCCTCATATGCCACAAATATGCCATTAGCTTTAGATGTAGAAAACAAGCAGTCTAATAGCAATACAGTCACCACTCCAAGTAGCACCACCACCACCAACAACAACACAACCAACAGTAGTAATCTGTCTATTATCTTTGACTCCCCAGATGAAATTGACAATGACATCTCTGCCTCTATAGACTTCTCACTATCACCGGCTTTCAATGTTCCACCATTTCTCCCAGTCACAAACCAGCAAGAACAGTTTGATTTCTCTTCAATGCAACCTCAGGTAGCAGCATGTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCATTGACTCTGTAGCACCTCTTATGGGAGCTCCATTACCATCTGTTTTTGAAGAGGATTGCATATCTTCTGTTCCTTCTTATATGCCTCTGAACCCTTCATCTCCCTCTTGCACTTACCTCAATCCTGGCATGGCAGCATACATGCCTCCTGGGCCCCTTACTACTGCCTTATCAGCTGATAGTTCTAGTTTATTTGGAGGGAGCATTCTTCTTGGTTCTGAACTTCAGACACAAGAACTGGAATACCAGGGAGAAAATAGTAGATTATATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGGCACTTAGTACTGAGAGTCAGCAACTAGTAGCTGGGGCTGGAAGTTCTGCATCCTTGACACCAGAAATCTCAAACTTGGAGGACTCCACCTTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCACAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCATGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATACCCATAGACCTGCTGGTAGCAATCATGAAGAAGAAGATGATGAAGTAGTTGTGAAAGATGAAGATGACATGGTTGATTCCTCAGATATATTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCATGGATTTGA 1176 0.4235 GFSDEISSPLSARIFELCNPEFFPEALQNSEVTSSSNCCYEENSSYATNMPLALDVENKQSNSNTVTTPSSTTTTNNNTTNSSNLSIIFDSPDEIDNDISASIDFSLSPAFNVPPFLPVTNQQEQFDFSSMQPQVAACSVVEGFSQYPIDSVAPLMGAPLPSVFEEDCISSVPSYMPLNPSSPSCTYLNPGMAAYMPPGPLTTALSADSSSLFGGSILLGSELQTQELEYQGENSRLYCTDSIQRVFNPPDLQALSTESQQLVAGAGSSASLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTHRPAGSNHEEEDDEVVVKDEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1560g00012 391 MobiDBLite consensus disorder prediction 59 83 - -
Gabi1560g00012 391 Pfam CCT motif 294 336 IPR010402 GO:0005515
Gabi1560g00012 391 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Gabi1560g00012 391 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 26 352 IPR045281 GO:0009909
Gabi1560g00012 391 MobiDBLite consensus disorder prediction 333 357 - -
Gabi1560g00012 391 MobiDBLite consensus disorder prediction 333 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1560g00012 Gabi-Chr1560 101172 106341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1560g00012 294 352 C2C2-CO-like Transcription Factor Family AT5G57660 45.312 7.45e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1560g00012 CCT 5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1560g00012 - - aprc:113871720 613.994