Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi155g00005 ATGCAATGGAAGTCAATGATTGACGTTTTCAAGTTCAAGTCTGTGCGAAAATTAACAAGCATTCCTCTGCTTTCAACGACACATGAAGTATCTAAGAAAGGGTTGACAAAGAAGTTGGCTCGTATTCGGAGTGCGGAAGATAGTATTGATATTGGAGCTATTGCTACGAAACCCTCTTGGAGGAACTTCGATTACGCAGAGCTCGCAGCTGCAACTCGTGATTTCAGTTCTGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTATACAAAGGATACTTATCCGATGGTCAAGTTGTAGCAATAAAGAGGTTAATGAAGAACGAAAAGGATGCAGGGGACAGAGCTTGTGATTTCTTGACAGAGCTTGGGATTATTGCACACATAAACCACCCAAATGCATCACGCCTTGTTGGGTTTGGGATCGATCATGGCCTCTACTTTGTCCTAGAATTTGCTTCACATGGCAGCCTTGCTTCTTTGCTTTTTGGTTCTGAATGCTTGTGTTGGAAGATAAGGTTCAAGGTAGCTATTGGGGTAGCAGAGGGATTGCAGTATCTCCATCAAGATTGCCCAAAAAGAATCATTCACAGGGACATCAAAGCCTCCAACATATTACTCGGCCAAAACTATGAAGCTGAGGAAAATAATTCGTTCTGTTATGAACTTCAGATTTCAGATTTTGGACTGGCCAAGTGGCTCCCAAATAAGTGGATCCACCATGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCGGAGTACTTTATGCATGGACTTGTGGACGAGAAGACTGATGTATTCGCATTTGGGGTTTTGTTATTGGAACTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGCAAGCAAAGTCTTGTGATATGGGCCAAGCCACTGCTGGATGCAAACAATGTAAAGGAAATAGCAGACCCCAGATTAGAAGGGGAATATGATCCTACTGAAATGAGGCGTGCCATGATGATAGCTTCCATGTGTGTCCACCATGCATCCTCCAAGCGACCATACATGAATCAGGTTGTGCCGCTACTAAAGGGTGAAGAGGCAACTATAGACCCCAAGCAAATTTCAGTTGCACCAAAATCTCTCATGTTAGAGGCATGTGACTTGGAAGATTATACATGCTCTAATTACTTGAAGGACCTGAACCGCCATAGGCAACTAATCCTGGAGTGA 1200 0.435 MQWKSMIDVFKFKSVRKLTSIPLLSTTHEVSKKGLTKKLARIRSAEDSIDIGAIATKPSWRNFDYAELAAATRDFSSENLVGKGGHAEVYKGYLSDGQVVAIKRLMKNEKDAGDRACDFLTELGIIAHINHPNASRLVGFGIDHGLYFVLEFASHGSLASLLFGSECLCWKIRFKVAIGVAEGLQYLHQDCPKRIIHRDIKASNILLGQNYEAEENNSFCYELQISDFGLAKWLPNKWIHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSKQSLVIWAKPLLDANNVKEIADPRLEGEYDPTEMRRAMMIASMCVHHASSKRPYMNQVVPLLKGEEATIDPKQISVAPKSLMLEACDLEDYTCSNYLKDLNRHRQLILE 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi155g00005 399 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Gabi155g00005 399 Gene3D Transferase(Phosphotransferase) domain 1 154 367 - -
Gabi155g00005 399 Gene3D Phosphorylase Kinase; domain 1 35 152 - -
Gabi155g00005 399 SMART serkin_6 75 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi155g00005 399 Pfam Protein kinase domain 77 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi155g00005 399 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi155g00005 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gabi155g00005 399 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 50 152 - -
Gabi155g00005 399 SUPERFAMILY Protein kinase-like (PK-like) 59 356 IPR011009 -
Gabi155g00005 399 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 154 365 - -
Gabi155g00005 399 PANTHER OS08G0249100 PROTEIN 2 362 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi155g00005 Gabi-Chr155 58429 62314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi155g00005 48 358 Trihelix Transcription Factor Family AT5G38560 43.653 1.14e-67 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi155g00005 Pkinase 4.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi155g00005 - - gmx:100818314 658.677