Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi155g00004 ATGGCTCGTGCGACTAACTGGCTATCGTTTTCGCTGTCGCCCATGGAAATGCTCAGGTCCTCCGAACCACAGTTCGTTCAATACGACGCCGCTTCAGCTACTTCTTCTCATCATCATTACTTCCTCGATAACTTGTATAACAACGGTAACCAAGGGCACGGAACCATGGCGGAACCACCGTCTCTTTTTCTAACGAGCTTCATGGACTCATCATCGCAGTTGCAGAATCTAAACCAGCCACCACCCCCGCCGAAGCTGGAGGATTTTCTCGGCGATTCTTCCTCCATGATGCGCTACTCCGATAGCCAAACGGAGACCCAAGACTCTTCCCTCACTCACATATACGACCACCATGGTGGTGGCTCCGCTTACTTCGGCGGCGACCACCAAGATCTCAAGGCCATAACTGCCTTCCAAGCTTTCTCCACCAACTCTGGCTCCGAGGTTGATGACTCTGCCTCCATCGGAAAAGCGCAGCAACCTTGCGGCAACGAGTTCGGGACTCATTCCATTGAGTCATCAGGGAACGAGTTCGCCTTCTCTGCCTCCACCGCCGCCGCAGCTACCGGTACTTTGTCTCTCGGAGTCTCGCAGAGTTCCGAGAAGGCCGTCGTCGCGGCGGATTCCGATAGCTCTAAGAAGATCGCCGATACCTTTGGCCAGCGAACTTCAATTTACAGAGGAGTTACCAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGTTGCAGAAGAGAGGGTCAAGCAAGGAAAGGGCGTCAAGGTGGATATGACAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACCGCTACCACCAACTTCCCTGTTTCTAATTATGCAAAGGAATTGGAAGAGATGAAACATGCAACAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGTGGTTTTTCAAGGGGAGCTTCCATATACAGGGGTGTTACAAGGCATCATCAACAGGGTAGATGGCAAGCAAGAATTGGCCGTGTGGCTGGAAACAAAGATTTATACTTGGGGACATTCGCAACTGAAGAGGAAGCAGCAGAGGCATACGATATTGCAGCAATAAAGTTTAGAGGTGCAAACGCTGTAACAAATTTTGAGATGAATAGATATGATGTGGAAGCCATAATGAAGAGTTCTCTTCCAGTTGGTGGGGCAGCAAAAAGGTTGAAGCTTTCTCTAGAATCAGAGCAGAAACCCCCTCTGAGCAGTACTCAGCAGAACCAACAGTGTGCAAACGTGAGTAGCAGCATCAATTTCTCAGCCATTCATCAGCCAGTTGCTTCAATCCCTTATGGAATTCCGTTTGATTCAACAACAGCATATTATCATCACAATCTCTTCCACCATTTTCATCCTTCCAATGCTGAGTCAGTTGTAACTTCAACCAATGCAACTGGAATGACTGCACTGCCACCAGCAGCAGCAGCTGAGTTCTTTATATGGCCTCATCAGTCATATTGA 1509 0.4877 MARATNWLSFSLSPMEMLRSSEPQFVQYDAASATSSHHHYFLDNLYNNGNQGHGTMAEPPSLFLTSFMDSSSQLQNLNQPPPPPKLEDFLGDSSSMMRYSDSQTETQDSSLTHIYDHHGGGSAYFGGDHQDLKAITAFQAFSTNSGSEVDDSASIGKAQQPCGNEFGTHSIESSGNEFAFSASTAAAATGTLSLGVSQSSEKAVVAADSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHATKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKLSLESEQKPPLSSTQQNQQCANVSSSINFSAIHQPVASIPYGIPFDSTTAYYHHNLFHHFHPSNAESVVTSTNATGMTALPPAAAAEFFIWPHQSY 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi155g00004 502 CDD AP2 224 290 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 424 - -
Gabi155g00004 502 Pfam AP2 domain 225 280 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 Pfam AP2 domain 324 374 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 SUPERFAMILY DNA-binding domain 323 383 IPR016177 GO:0003677
Gabi155g00004 502 SUPERFAMILY DNA-binding domain 224 290 IPR016177 GO:0003677
Gabi155g00004 502 PRINTS Ethylene responsive element binding protein signature 226 237 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 PRINTS Ethylene responsive element binding protein signature 364 384 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 ProSiteProfiles AP2/ERF domain profile. 324 382 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 CDD AP2 323 382 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 Gene3D AP2/ERF domain 324 384 IPR036955 GO:0003700|GO:0006355
Gabi155g00004 502 Gene3D AP2/ERF domain 225 290 IPR036955 GO:0003700|GO:0006355
Gabi155g00004 502 ProSiteProfiles AP2/ERF domain profile. 225 288 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 SMART rav1_2 324 388 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 SMART rav1_2 225 294 IPR001471 GO:0003700|GO:0006355
Gabi155g00004 502 FunFam AP2-like ethylene-responsive transcription factor ANT 224 290 - -
Gabi155g00004 502 FunFam AP2-like ethylene-responsive transcription factor 323 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi155g00004 Gabi-Chr155 40084 44108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi155g00004 61 502 AP2-EREBP Transcription Factor Family AT5G10510 59.160 9.61e-172 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi155g00004 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi155g00004 K09285 - gmx:100777168 792.727