Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1557g00010 ATGGAAAACATGAAGAAGAAACCATTTTTATGGCTTTCTCTCCTCATAATCTGCTTCTCTTTTCACACCTACACATCCCTTGCTGCTTTGACCACCATCTCAGCAAATCAATCTCTTTCCGGTGATCAAACTCTTGTCTCAACAGATGGGAACTTTGAATTGGGTTTCTTCAATCAAGGTAATTCCTCTAACTACTACATAGGCATGTGGTACAAAAAGGTTTCTGTAAAGACATATGTTTGGGTAGCAAATAGAGATAACCCAGTTTCTGATAAGAATTCTACCATGTTAACAATATCGCGTGGTAATTTAGTTATTTTGGACAAGTCTCAAAATCTAGTTTGGTCAACAAATTTGAGTTCTCCTAGCTCAGGTTTTGTAGTAGCTACCCTTCTAGGTACTGGGAATCTTATATTAAGTGATAAGCCTAATGCATCAGAATCAGATGCACTGTGGCAGAGTTTTGATCATCCAACAGATACATGGCTTCCAGGTGGCAAAATAAGATTAGATAACATAACAAAGCAGCCTCAATATCTCACTTCCTGGAAGAACAGTGATAATCCTGCAACAGGCCTATTTTCGCTGGAATTAGATCCCAATGGAACCAATTCATATCTGATTCTTTGGAATAAATCTCAAGAGTATTGGTCAAGTGGTACTTGGAATGGACAGATTTTCAGCTTGGTTCCTGAAATGAGGGCAAACTATATCTACAATTTCAGCTTTCAGTCGAACGCGAATGAGAGCTACTTCACATATTCATTGTATAACAATTCTATTATATCTCGTTTTGTAATGGATGTCTCGGGGCAGATCAAGCAATTCACTTGGCTGGAAAATACTCAGCAATGGAATTTGTTCTGGTCACAGCCAAGACAACAATGCGAGGTTTATGCTTTTTGTGGAGCATTTGGGAGCTGCACTGAGAATTCAGAGCCATATTGTAATTGTTTAACTGGCTATGAGCCAAGGTCACAATCTGATTGGGATTTGGAGGATTACTCAGGTGGGTGTGTGAGAAAAACCGAGTTTCAATGTGAGACATTGAATCCCTCTAATGGGGCCAAGGATAGGTTCCTACCAATGCCTAACATGGCATTGCCTAAAAATGCAGAATCTGTGGGAGCAGGGAATGCTGGCGAATGCGAGTCAACTTGCTTGAGCAGTTGTTCCTGCACTGCATATGCTTATGCTGGTAACTGTTCAATATGGAATGAAGATCTTTTGAATCTGCAACAGCTTGCTCAAGATGATAGTAGCGGAGAGACTTTGTTTCTTAAACTTGCAGCATCTGAGTTTCATGATGCTAAGAGCAATAAGGGGACAATCATTGGTGTTGTTGCTGGTGCGGTTGGTGGCATAGTTGTTCTCTTAATCCTTGTTCTATTTATCATGCTGAGGCAAAGAAAAAGACAAGTTGGGGCAGGAACACATATGGAGGGCTCATTGGTGGCATTTGGGTACAGAGATTTGCAAAATGCTACGAAGAATTTCTCAGACAAGTTGGGCGGAGGAGGTTTTGGTTCTGTCTTCAAAGGAACATTGCCTGATTCAAGTGTCATAGCAGTGAAGAAGCTCGATAGCATTAGCCAAGGTGAGAAGCAGTTCAGAACAGAAGTGAGTACAATTGGGACAGTCCAACATGTCAACCTTGTTAGGCTTCGAGGGTTCTGTTCCGAAGGTGACAAGAGACTGCTTGTTTATGATTACATGCCAAATAGCTCCTTGGATTCCAAACTTTTTCAGGAAAAGAGTTCCAAGGTGTTGGATTGGAAAATAAGATACCAAATTGCTCTGGGAACAGCTAGGGGATTGAATTATCTCCATGAGAAGTGCAGAGATTGTATCATACACTGTGATGTGAAGCCAGAAAATATTCTCCTAGACGCTGATTTTTGTCCAAAGGTTGCAGACTTTGGCCTTGCAAAGCTGGTTGGAAGAGACTTCAGCAGGGTCCTCACTACCATGAGAGGAACAAGAGGTTATCTTGCCCCAGAGTGGATTTCAGGAGTGGCTATCACTGCCAAAGCTGATGTTTACAGCTATGGAATGATGCTTTTTGAGTTTGTATCTGGTAGGAGGAACTCTGAGCCATCTGAAGATGGCCAAGTTAAGTTCTTTCCTACCTGGGCTGCCAGCATAGTGCACCAACAAGACATTTTGCTTAGCCTTTTGGACCCTAGGTTGGAGGGAAATGCTGACATTGAAGAGGTCACTAGAGTCATAAAAGTTGCTTCATGGTGTGTCCAAGATGATGAATCTCATAGGCCATCTATGGGTCAGGTTGTTCAAATGCTTGAGGGGCTCTTGAATGTGACTTTGCCTCCAATTCCACGATCCCTACAAGCCTTTGTTGACAACCAGGAGAACATAGTTTTCTTCACAGACTCAAGTTCCACCAATAATAGTTCACAGGTAAAGAGCAATGTCTCTGCAGCCTCCTCTGAAGTCAAAAGCAACATCTCATCCTCTAGCTCCTAG 2484 0.4203 MENMKKKPFLWLSLLIICFSFHTYTSLAALTTISANQSLSGDQTLVSTDGNFELGFFNQGNSSNYYIGMWYKKVSVKTYVWVANRDNPVSDKNSTMLTISRGNLVILDKSQNLVWSTNLSSPSSGFVVATLLGTGNLILSDKPNASESDALWQSFDHPTDTWLPGGKIRLDNITKQPQYLTSWKNSDNPATGLFSLELDPNGTNSYLILWNKSQEYWSSGTWNGQIFSLVPEMRANYIYNFSFQSNANESYFTYSLYNNSIISRFVMDVSGQIKQFTWLENTQQWNLFWSQPRQQCEVYAFCGAFGSCTENSEPYCNCLTGYEPRSQSDWDLEDYSGGCVRKTEFQCETLNPSNGAKDRFLPMPNMALPKNAESVGAGNAGECESTCLSSCSCTAYAYAGNCSIWNEDLLNLQQLAQDDSSGETLFLKLAASEFHDAKSNKGTIIGVVAGAVGGIVVLLILVLFIMLRQRKRQVGAGTHMEGSLVAFGYRDLQNATKNFSDKLGGGGFGSVFKGTLPDSSVIAVKKLDSISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGDKRLLVYDYMPNSSLDSKLFQEKSSKVLDWKIRYQIALGTARGLNYLHEKCRDCIIHCDVKPENILLDADFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEPSEDGQVKFFPTWAASIVHQQDILLSLLDPRLEGNADIEEVTRVIKVASWCVQDDESHRPSMGQVVQMLEGLLNVTLPPIPRSLQAFVDNQENIVFFTDSSSTNNSSQVKSNVSAASSEVKSNISSSSS 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1557g00010 827 CDD TM_EGFR-like 441 473 - -
Gabi1557g00010 827 SMART ntp_6 355 429 IPR003609 -
Gabi1557g00010 827 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Gabi1557g00010 827 PIRSF SRK 3 821 IPR024171 GO:0004674
Gabi1557g00010 827 CDD STKc_IRAK 503 770 - -
Gabi1557g00010 827 ProSiteProfiles PAN/Apple domain profile. 347 430 IPR003609 -
Gabi1557g00010 827 Pfam PAN-like domain 355 411 IPR003609 -
Gabi1557g00010 827 Pfam D-mannose binding lectin 78 184 IPR001480 -
Gabi1557g00010 827 Gene3D - 26 156 IPR036426 -
Gabi1557g00010 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 223 IPR036426 -
Gabi1557g00010 827 PANTHER OS07G0415500 PROTEIN 13 779 - -
Gabi1557g00010 827 Gene3D Transferase(Phosphotransferase) domain 1 572 775 - -
Gabi1557g00010 827 Pfam Protein kinase domain 500 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1557g00010 827 CDD B_lectin 36 158 IPR001480 -
Gabi1557g00010 827 SMART serkin_6 497 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1557g00010 827 FunFam Serine/threonine-protein kinase 25 155 - -
Gabi1557g00010 827 Pfam S-locus glycoprotein domain 217 325 IPR000858 GO:0048544
Gabi1557g00010 827 MobiDBLite consensus disorder prediction 799 827 - -
Gabi1557g00010 827 SMART blect_4 36 158 IPR001480 -
Gabi1557g00010 827 ProSiteProfiles Protein kinase domain profile. 497 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1557g00010 827 SUPERFAMILY Protein kinase-like (PK-like) 483 801 IPR011009 -
Gabi1557g00010 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Gabi1557g00010 827 FunFam Serine/threonine-protein kinase 572 775 - -
Gabi1557g00010 827 FunFam Serine/threonine-protein kinase 464 571 - -
Gabi1557g00010 827 CDD PAN_AP_plant 353 430 - -
Gabi1557g00010 827 Gene3D Phosphorylase Kinase; domain 1 463 571 - -
Gabi1557g00010 827 ProSitePatterns Protein kinases ATP-binding region signature. 503 526 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1557g00010 Gabi-Chr1557 161477 164246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1557g00010 437 769 Receptor kinase-like Gene Family AT1G56120 44.838 1.97e-78 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi1557g00010 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1557g00010 - - gmx:100782119 1279.23