Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1557g00008 ATGGTGAGAACCCCTTGCTGCGACAAAAGTGGACTGAAGAAAGGAACATGGGCACCCGAAGAAGACAAAAAGTTGATTGCTCATGTTACTAGGTTTGGCCACTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGAAAAAGCTGCAGATTGAGGTGGATGAATTATTTAAGGCCAGGCATCAAAAGAGGGAACTACACTCATGAAGAAGAAGAGACTATTGTCAAACTGCACGCAAGGTTTGGAAATAGGTGGTCTATGATTGCCTCTAACTTACCCGGAAGATCAGACAACGAGATAAAAAATCACTGGCATGCCCATCTTAAGAAGCGCTTTCAAAATAGTTCAGTATCAAATGAAAAAGCTGAAACATCCAAGTCAAAGCATCACTCCCAAGTTGAATCCATTCAAGAGAAGGACTCGGTAGAAATTGTTGATCCTTTCCAAAACACTTCTCCAACTACTTCTCAGACTCAAACCCCTGATGCCTCTCCATCATTGAGTGATATTTTTTGCACTATAGAGGAGCCTGCACCAGACGGTAACGGGAATTTGGTTATGGATGACTTTGCTAATTTTATGGATACATATACAGATCCCATAAGTGCATATTCTTGGACGGAACTCTCTTTGGCTGACATTTCCTACTTCCCAGGGGAACTACTTGCACCTTTCGTGACTGAAACCGAATGTTTCTTTCCAGTTTATGATGCACAACTTTGGGTTCTGTCCTAA 747 0.427 MVRTPCCDKSGLKKGTWAPEEDKKLIAHVTRFGHWNWRQLPKFAGLARCGKSCRLRWMNYLRPGIKRGNYTHEEEETIVKLHARFGNRWSMIASNLPGRSDNEIKNHWHAHLKKRFQNSSVSNEKAETSKSKHHSQVESIQEKDSVEIVDPFQNTSPTTSQTQTPDASPSLSDIFCTIEEPAPDGNGNLVMDDFANFMDTYTDPISAYSWTELSLADISYFPGELLAPFVTETECFFPVYDAQLWVLS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1557g00008 248 MobiDBLite consensus disorder prediction 126 145 - -
Gabi1557g00008 248 CDD SANT 69 112 IPR001005 -
Gabi1557g00008 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi1557g00008 248 CDD SANT 16 61 IPR001005 -
Gabi1557g00008 248 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 164 - -
Gabi1557g00008 248 FunFam MYB-related transcription factor 13 66 - -
Gabi1557g00008 248 SMART sant 66 114 IPR001005 -
Gabi1557g00008 248 SMART sant 13 63 IPR001005 -
Gabi1557g00008 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi1557g00008 248 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi1557g00008 248 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi1557g00008 248 Gene3D - 7 66 - -
Gabi1557g00008 248 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi1557g00008 248 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi1557g00008 248 Gene3D - 69 144 - -
Gabi1557g00008 248 MobiDBLite consensus disorder prediction 151 170 - -
Gabi1557g00008 248 MobiDBLite consensus disorder prediction 115 146 - -
Gabi1557g00008 248 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1557g00008 Gabi-Chr1557 94983 96311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1557g00008 1 116 MYB Transcription Factor Family AT5G16770 67.241 1.04e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1557g00008 Myb_DNA-binding 1.3e-10 CL0123