Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1554g00003 ATGGTGTACTGTGGTCACTGTGCCAAAAACGTTACTGGCCAGCGACTCGATGATGGTTACTTATGTTGTAAAGTCTGTGGAAGGGTGTTGGAAGATCAATATTTTTCTGAGGAGCCAACGTTTTTTAAAAACGCAGCAGGGCAGAGCCAATTATCGGGCAATTATGTAAGAACGATTCAAAGCGAGTACTCTGCTTCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATGAAGTATTTAAGCTTCAGCCTTGGAGTGAATGATGAAAATATGGCCAACCAAGCTTTGGCCTTTTATAAAATAGCGATTGAGCGAAATTTCACCCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTCAGGCAAAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTTTATGTGCTTGGAGCAGTTTTCTTGCAGCTTTGTAAAGTGTTAAGGCTTGAAGAGCACCCAATTGTTCAAAAGCCAGTTGATCCTAGTCTTTTTATTTATAAATATACTAATAATTTATTAAACCAAAGGAGTGTGCTTGTCTCGGAAACTGCACTGAGCATTATTGCAAGCATGAAACGGGACTGGATGCAGACGGGGAGGAAACCTAGTGGATTATGTGGTGCAGCATTATACATTTCTGCTCTTGCACATGGTTTTAAGTACTCTAAGCCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACCAAGCGATTGGTTGAATTTGAGAACACAGAGTCTTCTAGCTTGACAATTGAGGAATTGAATACGATGGCAAAAGAACACGAAAGAAATCCAACACTAATTCCAAATGATGAAGTCAAAAAATGTAATTCAAAAGATCTACTGTGCGAGCACAAGGATAGTGGAGTGGCGTATTTTGCTCTTGGATTATGTGAAACATGCTATAAGGATTTTGATAAACTCTCTGGAGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCAAGCTGAGATGGAGAGAATGAAAAGCACACTTTCTGAGGAAATTGCCGACGAATCACATGATTTGTTGAAAGCATCAAATGGTGCGTGCAAGAGCCGGAAAGAAGATTTTCCTTCCTCTGTGCCAGAAAGTATTGGTGCTAATGTTGAGCATGAGGCCACTAAAGATGGTAAGTATGATGAGTCACATAGAGAAGATGATACCAGTGCAAAAACTGATGATGAATCAGAAAGTTTCTCAGATATTGATGATCAAGAGGTTGATGGGTATCTTAACAATGACGAGGAGAAGCATTACAAGAAGATAATATGGGAAAAAGTGAACCGAGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGCAGCAGCTGCTAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCGGACGATTTACTAGCAGCAAGAGAGCTTGCGGCATCTGCTGCTGCAGCTGTAGCAAAATCCAGAATGGTGATGTTTGAATCAATTTTTCAATGA 1518 0.4005 MVYCGHCAKNVTGQRLDDGYLCCKVCGRVLEDQYFSEEPTFFKNAAGQSQLSGNYVRTIQSEYSASRQRTLDRAYDEMKYLSFSLGVNDENMANQALAFYKIAIERNFTRGRKSEQVQAACLYIAFRQNNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLNQRSVLVSETALSIIASMKRDWMQTGRKPSGLCGAALYISALAHGFKYSKPDILRIVHVCEATLTKRLVEFENTESSSLTIEELNTMAKEHERNPTLIPNDEVKKCNSKDLLCEHKDSGVAYFALGLCETCYKDFDKLSGGLGGGLDPPAFQQAEMERMKSTLSEEIADESHDLLKASNGACKSRKEDFPSSVPESIGANVEHEATKDGKYDESHREDDTSAKTDDESESFSDIDDQEVDGYLNNDEEKHYKKIIWEKVNREYLEEQAAKEAAAAAAKKAFEANFENCSDDLLAARELAASAAAAVAKSRMVMFESIFQ 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1554g00003 505 SMART cyclin_7 176 259 IPR013763 -
Gabi1554g00003 505 SMART cyclin_7 76 158 IPR013763 -
Gabi1554g00003 505 Gene3D Single helix bin 409 460 - -
Gabi1554g00003 505 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 395 IPR000812 GO:0006352|GO:0070897
Gabi1554g00003 505 Gene3D - 173 264 - -
Gabi1554g00003 505 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Gabi1554g00003 505 Gene3D - 63 165 - -
Gabi1554g00003 505 FunFam Transcription factor IIIB subunit 173 262 - -
Gabi1554g00003 505 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Gabi1554g00003 505 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Gabi1554g00003 505 SUPERFAMILY Cyclin-like 172 265 IPR036915 -
Gabi1554g00003 505 Pfam Brf1-like TBP-binding domain 418 466 IPR011665 -
Gabi1554g00003 505 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Gabi1554g00003 505 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Gabi1554g00003 505 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Gabi1554g00003 505 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Gabi1554g00003 505 MobiDBLite consensus disorder prediction 367 426 - -
Gabi1554g00003 505 MobiDBLite consensus disorder prediction 387 414 - -
Gabi1554g00003 505 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Gabi1554g00003 505 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1554g00003 Gabi-Chr1554 24425 48921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1554g00003 1 496 Inorganic Solute Cotransporters AT2G01280 42.490 4.67e-103 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1554g00003 K15196 - gmx:100817609 734.176