Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1553g00011 ATGATGATAAGTTTCAAACCCCATCACTTCTATCCTCTCTTCCTCTTTATCCTCTTCATCATTGGACTTGTTCTTGATCCTTCTAATGCTCAAACTGAGACACAAAAAAACAACACAGGCTTTAGCTGCAACAAGAGTTCGTATCCATGTGAAGCCTATGCTTTCTATAGTGCCTCAAGTCCAAATTTTCTTGACCTTGCTTCAATAGGTGACCTTTTCTCTGTTAGCCGCCTCATGATATCAAAACCAAGCAACATATCAAACTCTTCATCACCTCTTGTCCCTAACCAACCCCTCTTTGTTCCCTTAACTTGTTCTTGCAACACAGTTAACAGCACTTTTGGTTCCATATCTTATGCTAACATCTCATACACCATCAAACCCAATGACACTTACTACCTTGTCTCCACTTTCCAATTTATGAACCTCACAACCTTCCCTTCTGTTGAGGTTGTGAACCCAACTCATATCGCTACAAACCTATCAATTGGTGATGATGTTATATTCCCTGTCTTCTGCATGTGTCCTAATAACAGAACAACCCTTTTGCAAGAAAGAGCCAATTACATGATCTCTTATGTTGTTCAACCTTCTGATAACATATCATCAATTGCTTCAAGGTTTGGATCACAGGAACAGTCCATAATTGATGTGAATGGTGGTAAACTTACCCTTTATGATACCATCTTTGTTCCGGTGACTCGGTTGCCGGTTCTTTCGCAACCGGCGGTGGTTCCTTCTTCTCCTCCTCCTGCTGCTGCTGCTGGAAATGGAAGCTCTGATGATAGGACTGGGACAGTTAGAGGATTGGCTATTGGGTTGGGAATTACTGGGTTGTTGTTGATTTTGGTAACTGGGTTGTGGTTTTATAGGGAGGTTATGTTCAAGGATAGGGTGGGGATGGTTAGAGATGAGGAACAACAGAGGAAGAAGCATAACTTGCATGTGGGAGGGAAAGAGAACAAAGGGAACAAGCATATGGATGTCATGTTGATGGCTAATGTATCAGATTGCTTGGACAAGTATAGGGTGTTTGGAATTGAAGAACTGATAGAAGCCACTGATGGGTTTGATCAAAGTTGCTTGATTCAGGGTTCTGTCTACAAAGGCTCAATTGATGGGGAAGTATTTGCAATCAAGAAGATGAAGTGGAATGCCTATGAGGAGCTCAAGATCTTACAGAAGGTAAACCACGGGAATCTGGTGAAGTTGGAGGGATTTTGCATAGACCCGGAAGAAGCAAATTGCTATCTAGTCTATGAATATGTTGAGAATGGATCTCTTTACTCATGGCTGCATGAGGACAAAAACGAAAAGCTGAATTGGAAAACAAGGCTGAGAATAGCCATTGACATTGCCAATGGTCTCCAATACATACACGAGCACACAAGGCCAAGAGTTGTGCACAAAGACATCAAGAGCAGCAATATTCTATTGGATTCCAGCATGAGAGCCAAAATTGCCAATTTTGGGCTTGCAAAGTCAGGAATGAATGCCATTACAATGCACATAGTGGGAACACAGGGCTATATTGCCCCTGAATATCTAGCTGATGGTGTGGTCTCAACAAAGATGGATGTGTTCTCTTTTGGGGTTGTGTTGCTTGAACTAATTTCTGGGAAGGAAGCCATTGATGAGAAGGGAAATCTCTTGTGGGCAAGTGCCATAAAAACTTTTGAATTGAATAATGAGCAAGAGAAGGCTAGGAGACTTAAGGAATGGATGGATAAGGCTATTTTAAGGGACACATGCTCAATGGAAAGTTTGATGGGCGTTCTCACCATTGCAATTGCTTGTTTCCATAAAGACCCATCAAAGAGGCCCAGCATAGTTGACATTGTCTATGCATTATGTAAAAATGAAGATACAGGCTTCGAACTCTCAGATGAAGGGATTGGTTCCCCAAGGTTGGTGGCTAGGTGA 1923 0.4202 MMISFKPHHFYPLFLFILFIIGLVLDPSNAQTETQKNNTGFSCNKSSYPCEAYAFYSASSPNFLDLASIGDLFSVSRLMISKPSNISNSSSPLVPNQPLFVPLTCSCNTVNSTFGSISYANISYTIKPNDTYYLVSTFQFMNLTTFPSVEVVNPTHIATNLSIGDDVIFPVFCMCPNNRTTLLQERANYMISYVVQPSDNISSIASRFGSQEQSIIDVNGGKLTLYDTIFVPVTRLPVLSQPAVVPSSPPPAAAAGNGSSDDRTGTVRGLAIGLGITGLLLILVTGLWFYREVMFKDRVGMVRDEEQQRKKHNLHVGGKENKGNKHMDVMLMANVSDCLDKYRVFGIEELIEATDGFDQSCLIQGSVYKGSIDGEVFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEDKNEKLNWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSSMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDEKGNLLWASAIKTFELNNEQEKARRLKEWMDKAILRDTCSMESLMGVLTIAIACFHKDPSKRPSIVDIVYALCKNEDTGFELSDEGIGSPRLVAR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1553g00011 640 ProSiteProfiles LysM domain profile. 191 238 IPR018392 -
Gabi1553g00011 640 Pfam Protein kinase domain 366 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1553g00011 640 SUPERFAMILY Protein kinase-like (PK-like) 342 617 IPR011009 -
Gabi1553g00011 640 SMART serkin_6 357 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1553g00011 640 FunFam PTI1-like tyrosine-protein kinase 3 423 624 - -
Gabi1553g00011 640 CDD LysM 191 222 IPR018392 -
Gabi1553g00011 640 Pfam LysM domain 193 230 IPR018392 -
Gabi1553g00011 640 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 619 - -
Gabi1553g00011 640 Gene3D LysM domain 190 232 IPR036779 -
Gabi1553g00011 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Gabi1553g00011 640 Gene3D Transferase(Phosphotransferase) domain 1 423 629 - -
Gabi1553g00011 640 Gene3D Phosphorylase Kinase; domain 1 327 422 - -
Gabi1553g00011 640 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1553g00011 Gabi-Chr1553 208590 212506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1553g00011 2 619 Receptor kinase-like Gene Family AT2G23770 33.023 5.78e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi1553g00011 Pkinase 5.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1553g00011 - - lang:109352405 935.25