Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1553g00010 ATGGAAAACGCAGTGACATATGAGCATGATCTCAACCTCAAGGCAACCGAGCTTAGATTGGGGTTGCCAGGGACAGAGGAAAAGGAAGAGAAAAAAACCATTTCTGGTGTCAAAAGCAACAAAAGGCAATTGCCCGAAACATCTGAAGAGTCTAATGATGCTGCCCCTCCTGCCAAAGAAAAGATAGTGGGGTGGCCACCAATCAGATCATATAGGAAAAACAGCCTGCAGGAAGCTCAGGGTGCTGGGATCTACGTGAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATTGACTTGAAGATCTATGGTGGCTATCCAGAACTCCTCAAGGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCTACATATGAAGACAAGGACGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTACGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGTTCAGAGGCTAGAGGTTTGGGCTGTGGTGTATGA 543 0.4586 MENAVTYEHDLNLKATELRLGLPGTEEKEEKKTISGVKSNKRQLPETSEESNDAAPPAKEKIVGWPPIRSYRKNSLQEAQGAGIYVKVSMDGAPYLRKIDLKIYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFTTSCKRLRIMKGSEARGLGCGV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1553g00010 180 MobiDBLite consensus disorder prediction 19 60 - -
Gabi1553g00010 180 Pfam AUX/IAA family 44 177 IPR033389 -
Gabi1553g00010 180 SUPERFAMILY CAD & PB1 domains 74 169 - -
Gabi1553g00010 180 MobiDBLite consensus disorder prediction 21 56 - -
Gabi1553g00010 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 174 IPR003311 GO:0005634|GO:0006355
Gabi1553g00010 180 FunFam Auxin-responsive protein 78 180 - -
Gabi1553g00010 180 Gene3D - 77 180 - -
Gabi1553g00010 180 ProSiteProfiles PB1 domain profile. 83 170 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1553g00010 Gabi-Chr1553 173104 174749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1553g00010 86 176 B3 DNA Binding Superfamily AT2G46530 37.363 2.05e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gabi1553g00010 AUX_IAA 1.3e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1553g00010 K14484 - gmx:100800212 296.975