Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1553g00009 ATGGAAAACGCAGTGACATATGAGCATGATCTCAACCTCAAGGCAACCGAGCTTAGATTGGGGTTGCCAGGGACAGAGGAAAAGGAAGAGAAAAAAACCATTTCTGGTGTCAAAAGCAACAAAAGGCAATTGCCCGAAACATCTGAAGAGTCTGTTTCCATTTCCAAGGCCTCAAATAGCCAACAAGTGAAGAATGATGCTGCCCCTCCTGCCAAAGAAAAGATAGTGGGGTGGCCACCAATCAGATCATATAGGAAAAACAGCCTGCAGGAAGCTCAGGGTGCTGGGATCTACGTGAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATTGACTTGAAGATCTATGGTGGCTATCCAGAACTCCTCAAGGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCTACATATGAAGACAAGGACGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTACGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGTTCAGAGGCTAGAGGTTTGGGCTGTGGTGTATGA 582 0.457 MENAVTYEHDLNLKATELRLGLPGTEEKEEKKTISGVKSNKRQLPETSEESVSISKASNSQQVKNDAAPPAKEKIVGWPPIRSYRKNSLQEAQGAGIYVKVSMDGAPYLRKIDLKIYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFTTSCKRLRIMKGSEARGLGCGV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1553g00009 193 ProSiteProfiles PB1 domain profile. 96 183 IPR000270 GO:0005515
Gabi1553g00009 193 MobiDBLite consensus disorder prediction 21 37 - -
Gabi1553g00009 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 187 IPR003311 GO:0005634|GO:0006355
Gabi1553g00009 193 MobiDBLite consensus disorder prediction 38 66 - -
Gabi1553g00009 193 FunFam Auxin-responsive protein 91 193 - -
Gabi1553g00009 193 SUPERFAMILY CAD & PB1 domains 87 182 - -
Gabi1553g00009 193 Gene3D - 90 193 - -
Gabi1553g00009 193 MobiDBLite consensus disorder prediction 20 73 - -
Gabi1553g00009 193 Pfam AUX/IAA family 40 190 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1553g00009 Gabi-Chr1553 173104 174749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1553g00009 99 189 B3 DNA Binding Superfamily AT2G46530 37.363 1.15e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi1553g00009 AUX_IAA 5.4e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1553g00009 K14484 - gmx:100800212 320.472