Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1553g00004 ATGGCCCAATCACATCCCTCTCTGTTCTTTACAGTGTGGAGGAATAAGCCAGAGCTGGTAGCTCCGGCGAAACCCACGCCTCGCGAACTGAAACTACTCTCAGACATTGATGACCAAGATGGTCTACGTTTCCAAATTCCGGTGATACAGTTCTATCGCTATGATCCAAAAATGGCAGGGAAAGACCCTGTTGAGATCATTAGAAAAGCACTGGCGAAAACGCTTGTGTTTTATTATCCTTTTGCAGGTAGGCTTAGGGAAGGTGCTGGTAGAAAACTCATGGTGGATTGTACTGGAGAGGGTGTTATATTCATTGAGGCTGATGCTGATGTCACGCTTGAACAATTTGGTGATGCTCTTCAACCCCCATTCCCATGCTGGGAAGAGCTCCTTTACGATGTTCCTGGTTCTGGGGAAGTCCTTAACACTCCCCTTATGCTAATACAGGTAACACGGTTGAAGTGTGGTGGTTACATCAACGCTCTCAGGGTGAACCACACCATGAGCGACGCAGCTGGTTTGGTCCAATTCATGACCGCTTTGGGTGAAATAGCTCGCGGGATGCGGGAACCTTCAATCCCACCAGTATGGCAAAGAGAGATTCTAAATGCAAGGGACCCACCAAGAGTGACATGTACTCATCGTGAATACGAACAAATACCTGACACCAAAGGAACGATTATCCCCTTAGATGACATGGCACATCGCTCTTTCTTCTTTGGTCCCTCTGAGGTTTCAGCCATTCGTCGTCTCATTCCACATCATCAACAACAATGCTCCAATTTTGAAATCCTCACTGCATGCCTTTGGCGTTGTCGCACAATAGCATTAAAACTAGACACTGATGAAGAGGTTCGCATCTTATGCATTGTTAATGCACGTGGCAAATTTGACCCTCCATTACCAACTGGATACTATGGCAACGCTTTTGCATTTTCTCCTGCGGTTACTACCGCAGGAAAGTTATGTGAAAATCTATTGGGTTATGCACTTACATTAGTGAGGAAAGCAAAAGCTGATGTTACTCAAGAGTATATGCATTCACTGGCAGATTTAATGGTCGTTAAGGGAAGACCACATTTTACTGTAGTGAGATCATATCTTGTGTCGGATGTGACACGTGCCGGGTTTGGAGATGTTGATTTTGGTTGGGGAAATGCTGTTTACGGAGGACCAGCTAAGGGAGGTGTTGGAGCTATACCTGGTGTGGCAAGCTTTTACATACCCTTTAAAAATGCTAAAGGAGAGGAAGGTTTAGTTATACCTGTTTGTTTACCATCTGAAGCCATGGAGAGGTTTGTAAAAGTCTTGGATAACACACTCAACAACCACTTCCAACCTACTATGGGTGTTCCATTTATCAATTCTCCTATATAG 1377 0.4488 MAQSHPSLFFTVWRNKPELVAPAKPTPRELKLLSDIDDQDGLRFQIPVIQFYRYDPKMAGKDPVEIIRKALAKTLVFYYPFAGRLREGAGRKLMVDCTGEGVIFIEADADVTLEQFGDALQPPFPCWEELLYDVPGSGEVLNTPLMLIQVTRLKCGGYINALRVNHTMSDAAGLVQFMTALGEIARGMREPSIPPVWQREILNARDPPRVTCTHREYEQIPDTKGTIIPLDDMAHRSFFFGPSEVSAIRRLIPHHQQQCSNFEILTACLWRCRTIALKLDTDEEVRILCIVNARGKFDPPLPTGYYGNAFAFSPAVTTAGKLCENLLGYALTLVRKAKADVTQEYMHSLADLMVVKGRPHFTVVRSYLVSDVTRAGFGDVDFGWGNAVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPVCLPSEAMERFVKVLDNTLNNHFQPTMGVPFINSPI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1553g00004 458 PANTHER ACYL TRANSFERASE 4 10 441 - -
Gabi1553g00004 458 Pfam Transferase family 16 435 - -
Gabi1553g00004 458 Gene3D - 218 438 IPR023213 -
Gabi1553g00004 458 Gene3D - 12 217 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1553g00004 Gabi-Chr1553 38956 41942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1553g00004 19 437 Monolignol Biosynthesis Gene Families AT5G48930 29.519 2.53e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1553g00004 K19861 - gmx:100797017 787.719